LOCUS AAL19087.1 495 aa PRT BCT 24-JUL-2018 DEFINITION Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase protein. ACCESSION AE006468-123 PROTEIN_ID AAL19087.1 SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4857450) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (bases 1 to 4857450) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA REFERENCE 3 (bases 1 to 4857450) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter COMMENT On Jan 13, 2016 this sequence version replaced AE006468.1. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /mol_type="genomic DNA" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus source /organism="Salmonella phage Fels-1" /mol_type="genomic DNA" /db_xref="taxon:128975" source /organism="Phage Gifsy-2" /mol_type="genomic DNA" /db_xref="taxon:129862" source /organism="Phage Gifsy-1" /mol_type="genomic DNA" /db_xref="taxon:129861" source /organism="Salmonella virus Fels2" /mol_type="genomic DNA" /db_xref="taxon:194701" protein /gene="murE" /locus_tag="STM0123" /EC_number="6.3.2.13" /note="similar to E. coli meso-diaminopimelate-adding enzyme (AAC73196.1); Blastp hit to AAC73196.1 (495 aa), 91% identity in aa 1 - 495" /transl_table=11 BEGIN 1 MADRNLRDLL APWVAGLPAR ELREMTLDSR VAAAGDLFVA VVGHQADGRR YIPQAIAQGV 61 AAIIAEAKDE ASDGEIREMH GVPVVYLSQL NERLSALAGR FYHEPSENMR LVAVTGTNGK 121 TTTTQLLAQW SQLLGETSAV MGTVGNGLLG KVIPTENTTG SAVDVQHVLA SLVAQGATFG 181 AMEVSSHGLV QHRVAALKFA ASVFTNLSRD HLDYHGDMAH YEAAKWMLYS THHHGQAIVN 241 ADDEVGRRWL ASLPDAVAVS MEGHINPNCH GRWLKAEAVE YHDRGATIRF ASSWGEGEIE 301 SRLMGAFNVS NLLLALATLL ALGYPLTDLL KTAARLQPVC GRMEVFTAPG KPTVVVDYAH 361 TPDALEKALQ AARLHCAGKL WCVFGCGGDR DKGKRPLMGA IAEEFADIVV VTDDNPRTEE 421 PRAIINDILA GMLDAGQVRV MEGRAEAVTN AIMQAKDNDV VLIAGKGHED YQIVGTQRLD 481 YSDRVTAARL LGVIA //