LOCUS VVC12395.1 868 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Aggrecan core protein protein. ACCESSION BX284606-4109 PROTEIN_ID VVC12395.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="T23E7.2" /locus_tag="CELE_T23E7.2" /standard_name="T23E7.2i" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00020732" intron_pos 40:1 (1/13) intron_pos 69:0 (2/13) intron_pos 99:0 (3/13) intron_pos 149:0 (4/13) intron_pos 305:1 (5/13) intron_pos 406:2 (6/13) intron_pos 559:2 (7/13) intron_pos 633:2 (8/13) intron_pos 729:0 (9/13) intron_pos 753:0 (10/13) intron_pos 772:0 (11/13) intron_pos 794:2 (12/13) intron_pos 832:2 (13/13) BEGIN 1 MSEVDAQEEF HDAPEEAVIE IQKDFVAEIE QDNSNAQLVE EGDDQLVTAE ADDEKSAQQV 61 DEDRTEDQVP DITGTEYVDP MTTSMDGIED LPANDEAQFE DTILEEDELP DQLESAENQE 121 PRSELVSSGV EEEIIEEEDI EEIEESDYVE ESAPADEPAP EEEKPQEEAP AEEPAPAEEA 181 PQEEVPAEEP VAEETAPAEE AAVEEPVVEE AAPVEEAPEA EETAPAEEPL IEVAVEEAPA 241 EEPVAEEAEP EAEKQEFELQ APPEGKRPRT PNDLDNPTAD EEPAAELEAD AGSEVPPTPK 301 TAASEKQSVP PTPKSAAPSE VPPTPKSAAP SEVPPTPKSA APSEVPLTPK SAAQSSVPPT 361 PKSAVPSEAP PTPRSAAPSD VPPTPKSNGH IANGSIPGTP SVAQERVEPE PEPVAEEPEP 421 VAEPEPEPEP VAEAEPEAEP AVEEEPAEEP EPAADETATE PTAEEAEPEA VEESIEKTEV 481 VEEESAPPAA RQSSPSPPPA RRRPQSPSPE RQRTSRHADR DITSYDEDSY RAVPPPRMPT 541 ATSFSSWSPP DKQSYTPISP FVSTANKYRN EYTSGSSYRP TNMYTSHFDD IVATGAFSSA 601 LYSTNRLIER SRSRTRERKQ AMRSQRSASN YYRYSSQAPA PLRAREYSTP PTREISRAPS 661 RNTSFVSFLD YSSAKQGELS RANSRTSIYG DSLSRSCSRA NVDAYLGGGR LSRVDSYVRD 721 IHTPYEYEVP STYDRYRSSS RGPSYSTING YTGRIGQLER SLSREVIQKD RLRTEYQQLS 781 TKLDQACRQM ELLSPYTPPN MEDHRLINRP EIRRSIAYTL DLRATGLPST ERWRLGNVVY 841 GGLYRKKYDA DLEKAVQYYS SCAKKRRF //