LOCUS       VVC12342.1               802 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans B-cell receptor CD22-like protein.
ACCESSION   BX284606-1466
PROTEIN_ID  VVC12342.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="igcm-2"
                     /locus_tag="CELE_SSSD1.1"
                     /standard_name="SSSD1.1a"
                     /note="Confirmed by transcript evidence"
                     /db_xref="WormBase:WBGene00020130"
     intron_pos      20:0 (1/18)
     intron_pos      73:1 (2/18)
     intron_pos      122:1 (3/18)
     intron_pos      162:0 (4/18)
     intron_pos      206:1 (5/18)
     intron_pos      262:0 (6/18)
     intron_pos      300:1 (7/18)
     intron_pos      350:0 (8/18)
     intron_pos      387:1 (9/18)
     intron_pos      428:0 (10/18)
     intron_pos      469:0 (11/18)
     intron_pos      495:1 (12/18)
     intron_pos      559:1 (13/18)
     intron_pos      604:0 (14/18)
     intron_pos      649:1 (15/18)
     intron_pos      709:1 (16/18)
     intron_pos      729:2 (17/18)
     intron_pos      751:0 (18/18)
BEGIN
        1 MSSSRYAAKF IRRQTDDGEM KAYWGKAGAP ITLPCSISLF NEESFSLDWR KDGQLILSAF
       61 GQEQGHVTPT LQGRLARDGF LGITIHSVTD GDAGVYQCIV TKFSKQPTRP EKGLSAKLVV
      121 NVPPVIISPS KNAIIHKKVG ADLIFECKAE GAPSPEITWS RNEQIISTSP VLTLSNLEEG
      181 DKGLYTCLAV NIEGNSTSSI DVRFTKATIL DLIPLNKTVI EGSNVFWHCH ANAQATAISY
      241 SWLFEKKPIK TTSLGLRSNI RSGDLSLQDV RKSDSGWYTC EAKNSAGETT SSTAYLHVFY
      301 PPEPLSSHQP VQTVASGRNT TVSCDVIANP TPTSYTWSKN GHYLPTQASS HIIISYAKPG
      361 DGGIYGCQAD NIAGKGSIVE THLIVAEPPV FTVAPPSEIK VRLGDQVSIP CQGFGDPMPI
      421 VYWIRDKKRI NQSTLTFKKV EHLDHGAYEC VVANSVETIS TRVMLLVEIT KPQMASSIKF
      481 TCLNSSSMRI SWTPGYNGGF DQTFAVHAQN DVTLQWTSIK TSLNETILDH LEPFVSYRVS
      541 IESVNAKGST NSTTYNRRSC TSLHAPDKLY FCGYNELCWT AAEGASSYRI ESRTEPSKNF
      601 QPLAEVLETY YRLGKDVDET KQTIFRVRST RPSYPPSEPS NALRYGIADN VDLPIFMLAA
      661 VFGLLFCFAC GLFAWRCFHN KNKKSKRRKS RSNSTPSKTY QDYGRFTYGD GSSSSQPGTE
      721 TYYEPSLRLL DDHEWRGPRD LEPVAVRYPP SLAELDYDIG EDHPIDDMFR DRYILGVQDP
      781 PAQLYQDLRL ERLRREYKQS QI
//