LOCUS SIU01567.1 1205 aa PRT BCT 25-MAY-2020 DEFINITION Mycobacterium tuberculosis variant bovis AF2122/97 PROBABLE CHROMOSOME PARTITION PROTEIN SMC protein. ACCESSION LT708304-2981 PROTEIN_ID SIU01567.1 SOURCE Mycobacterium tuberculosis variant bovis AF2122/97 ORGANISM Mycobacterium tuberculosis variant bovis AF2122/97 Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex. REFERENCE 1 AUTHORS Malone K.M. JOURNAL Submitted (06-DEC-2016) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine, University College Dublin, D4, Ireland REFERENCE 2 AUTHORS Malone M K., Farrell D., Malone K. JOURNAL Submitted (15-APR-2020) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine,, University College Dublin, D4, Ireland FEATURES Qualifiers source /organism="Mycobacterium tuberculosis variant bovis AF2122/97" /chromosome="Mycobacterium_bovis_AF212297" /isolate="AF2122/97" /mol_type="genomic DNA" /isolation_source="Mycobacterium bovis subsp. bovis strain AF2122/97. This strain is a fully virulent strain that was isolated in 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes. The strain was also reported to infect and persist in badgers that are considered to be a significant source of bovine infection." /db_xref="taxon:233413" protein /transl_table=11 /gene="smc" /locus_tag="BQ2027_MB2946C" /note="Mb2946c, smc, len: 1205 aa. Equivalent to Rv2922c, len: 1205 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 1205 aa overlap). Probable smc, chromosome partition protein (ala-, arg-, leu-, glu-rich protein, possibly coiled-coil protein) (see * below), equivalent (but longer 84 aa) to Q9CBT5|SMC|ML1629|MLCB250.01 POSSIBLE CELL DIVISION PROTEIN from Mycobacterium leprae (1203 aa), FASTA scores: opt: 5957, E(): 0, (79.15% identity in 1205 aa overlap). Also highly similar to other chromosome segregation proteins e.g. Q9ZBQ2|SC7A1.21 PUTATIVE CHROMOSOME ASSOCIATED PROTEIN from Streptomyces coelicolor (1186 aa), FASTA scores: opt: 2633, E(): 4.1e-120, (53.03% identity in 1205 aa overlap); P51834|SMC_BACSU CHROMOSOME PARTITION PROTEIN from Bacillus subtilis (1186 aa), FASTA scores: opt: 1009, E(): 2.1e-41, (30.75% identity in 1205 aa overlap); Q9CHC9|SMC CHROMOSOME SEGREGATION PROTEIN from Lactococcus lactis (subsp. lactis) (Streptococcus lactis) (924 aa), FASTA scores: opt: 996, E(): 7.5e-41, (29.75% identity in 874 aa overlap); etc. Equivalent to AAK47317 from Mycobacterium tuberculosis strain CDC1551 (1205 aa) but longer 84 aa. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE SMC FAMILY. N-terminus shortened since first submission. [*Note: Cobbe N., Heck M.M.S.- Phylogenetic analysis of SMC proteins (OCT-2001)]. Protein product from Mb2946c detected using shotgun mass spectrometry and SWATH mass spectrometry. Mb2946c found to be expressed during exponential growth in Sauton's minimal media by RNA-sequencing." /db_xref="GOA:A0A1R3Y2R1" /db_xref="InterPro:IPR003395" /db_xref="InterPro:IPR010935" /db_xref="InterPro:IPR011890" /db_xref="InterPro:IPR024704" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR036277" /db_xref="UniProtKB/TrEMBL:A0A1R3Y2R1" BEGIN 1 MYLKSLTLKG FKSFAAPTTL RFEPGITAVV GPNGSGKSNV VDALAWVMGE QGAKTLRGGK 61 MEDVIFAGTS SRAPLGRAEV TVSIDNSDNA LPIEYTEVSI TRRMFRDGAS EYEINGSSCR 121 LMDVQELLSD SGIGREMHVI VGQGKLEEIL QSRPEDRRAF IEEAAGVLKH RKRKEKALRK 181 LDTMAANLAR LTDLTTELRR QLKPLGRQAE AAQRAAAIQA DLRDARLRLA ADDLVSRRAE 241 REAVFQAEAA MRREHDEAAA RLAVASEELA AHESAVAELS TRAESIQHTW FGLSALAERV 301 DATVRIASER AHHLDIEPVA VSDTDPRKPE ELEAEAQQVA VAEQQLLAEL DAARARLDAA 361 RAERADRERR AAEADRAHLA AVREEADRRE GLARLAGQVE TMRARVESID ESVARLSERI 421 EDAAMRAQQT RAEFETVQGR IGELDQGEVG LDEHHERTVA ALRLADERVA ELQSAERAAE 481 RQVASLRARI DALAVGLQRK DGAAWLAHNR SGAGLFGSIA QLVKVRSGYE AALAAALGPA 541 ADALAVDGLT AAGSAVSALK QADGGRAVLV LSDWPAPQAP QSASGEMLPS GAQWALDLVE 601 SPPQLVGAMI AMLSGVAVVN DLTEAMGLVE IRPELRAVTV DGDLVGAGWV SGGSDRKLST 661 LEVTSEIDKA RSELAAAEAL AAQLNAALAG ALTEQSAGQD AAEQALAALN ESDTAISAMY 721 EQLGRLGQEA RAAEEEWNRL LQQRTEQEAV RTQTLDDVIQ LETQLRKAQE TQRVQVAQPI 781 DRQAISAAAD RARGVEVEAR LAVRTAEERA NAVRGRADSL RRAAAAEREA RVRAQQARAA 841 RLHAAAVAAA VADCGRLLAG RLHRAVDGAS QLRDASAAQR QQRLAAMAAV RDEVNTLSAR 901 VGELTDSLHR DELANAQAAL RIEQLEQMVL EQFGMAPADL ITEYGPHVAL PPTELEMAEF 961 EQARERGEQV IAPAPMPFDR VTQERRAKRA ERALAELGRV NPLALEEFAA LEERYNFLST 1021 QLEDVKAARK DLLGVVADVD ARILQVFNDA FVDVEREFRG VFTALFPGGE GRLRLTEPDD 1081 MLTTGIEVEA RPPGKKITRL SLLSGGEKAL TAVAMLVAIF RARPSPFYIM DEVEAALDDV 1141 NLRRLLSLFE QLREQSQIII ITHQKPTMEV ADALYGVTMQ NDGITAVISQ RMRGQQVDQL 1201 VTNSS //