LOCUS       QOD47115.1               432 aa    PRT              BCT 28-SEP-2020
DEFINITION  Pseudomonas aeruginosa SctD family type III secretion
            system inner membrane ring subunit PscD protein.
ACCESSION   CP058257-1877
PROTEIN_ID  QOD47115.1
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6580692)
  AUTHORS   Alamri,A.M. and Alnimr,A.M.
  TITLE     Whole Genome Sequence of an extensively Drug resistant Pseudomonas
            aeruginosa
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6580692)
  AUTHORS   Alamri,A.M. and Alnimr,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences,
            Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 20-JUN-2020
            Assembly Method           :: SOAPdenovo v. 1.05
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 100.0x
            Sequencing Technology     :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/29/2020 17:07:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 6,083
            CDSs (total)                      :: 6,023
            Genes (coding)                    :: 5,942
            CDSs (with protein)               :: 5,942
            Genes (RNA)                       :: 60
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 6 of 81
            Pseudo Genes (frameshifted)       :: 33 of 81
            Pseudo Genes (incomplete)         :: 47 of 81
            Pseudo Genes (internal stop)      :: 7 of 81
            Pseudo Genes (multiple problems)  :: 10 of 81
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa"
                     /mol_type="genomic DNA"
                     /strain="PA179"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:287"
                     /country="Saudi Arabia: Khobar"
                     /lat_lon="26.217192 N 50.197140 E"
                     /collection_date="2017"
                     /collected_by="Aisha Alamri"
     protein         /gene="pscD"
                     /locus_tag="HWH41_09440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAWKIRFYSG LNQGAEVSLG EGRVALGSDP LQADLVLLDE GIAAVHLVLE VDAQGVRLLE
       61 WAEGCEPRQD GQAQVAGAIL QALAGQTCGP LRWAFCDPQR SFPERFPEVE AQTAPVRRKP
      121 SARAGGAWLL GISLALALCL LGMLVEPWSA RQHGMAGEEP LARVRAYLRE QGMSEVDVQR
      181 QGDSLLLGGY LEDNARRLAL QRYLDGSGVD YRLEARSMED IRQGVDFILQ KFGYRQILSS
      241 NADKPGWVRL NGELAEQDER WARIDALLES EVPGLLGVEN QVRVAGSHLR RLERLLADAG
      301 LDRQLSFRER GERIELSGTL DEVQLSAFYR LQREFQQEFG NRPSLELLSR GKRASGDELE
      361 FTVRSVSLGR VPYVVLGDGQ KYPVGASTSR GVRILAIEPE SILVARGKQR FIINLKGEVL
      421 HDDSLGNATV GR
//