LOCUS       QOD47101.1               706 aa    PRT              BCT 28-SEP-2020
DEFINITION  Pseudomonas aeruginosa SctV family type III secretion
            system export apparatus subunit PcrD protein.
ACCESSION   CP058257-1863
PROTEIN_ID  QOD47101.1
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6580692)
  AUTHORS   Alamri,A.M. and Alnimr,A.M.
  TITLE     Whole Genome Sequence of an extensively Drug resistant Pseudomonas
            aeruginosa
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6580692)
  AUTHORS   Alamri,A.M. and Alnimr,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences,
            Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 20-JUN-2020
            Assembly Method           :: SOAPdenovo v. 1.05
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 100.0x
            Sequencing Technology     :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/29/2020 17:07:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 6,083
            CDSs (total)                      :: 6,023
            Genes (coding)                    :: 5,942
            CDSs (with protein)               :: 5,942
            Genes (RNA)                       :: 60
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 6 of 81
            Pseudo Genes (frameshifted)       :: 33 of 81
            Pseudo Genes (incomplete)         :: 47 of 81
            Pseudo Genes (internal stop)      :: 7 of 81
            Pseudo Genes (multiple problems)  :: 10 of 81
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa"
                     /mol_type="genomic DNA"
                     /strain="PA179"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:287"
                     /country="Saudi Arabia: Khobar"
                     /lat_lon="26.217192 N 50.197140 E"
                     /collection_date="2017"
                     /collected_by="Aisha Alamri"
     protein         /gene="pcrD"
                     /locus_tag="HWH41_09370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_250394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MNDLSGLLGR VGERKDILLV VLLLAVVFMM VLPLPPLLLD ILIAVNITIS VVLLMMSVYI
       61 GSPLQFSVFP AVLLITTLFR LALSVSTTRM ILLQADAGQI VNTFGSFVVG GNLVVGIIIF
      121 LIITIVQFLV ITKGAERVAE VSARFSLDAM PGKQMSIDGD MRAGVIDVNE ARARRAVIEK
      181 ESQMFGSMDG AMKFVKGDAI AGLIIIVVNI LGGIAIGVTQ KGLSTADALQ LYAVLTVGDG
      241 MVSQVPALLI AITAGIIVTR VSSDESADLG SDIGEQVVAQ PKALLIGGLL LVLFGLIPGF
      301 PTLTFLALAL LVGGGGYFML WRQRAQASAG SRDLPALLAQ GAGAPSAKAR GKAGGGKPKA
      361 GRLAEQEEFA LTVPLLIDVD ASLQERLEAM SLNEELVRVR RALYLDFGVP FPGIHLRFNE
      421 AMGDGEYLVQ LQEVPVARGC LRPGWLLVRE RAAQLELLAV PHEPAELQVP GEEASWVEQA
      481 HQDRLERSGC ACLGLEQVLT WHLSHVLREY AEDFIGIQET RYLLEQMEQG YGELVKEAQR
      541 IVPLQRMTEI LQRLVGEDIS IRNMRAILEA MVEWGQKEKD VVQLTEYIRS SLKRYICYKY
      601 SSGNNILPAY LLDQAVEEQI RGGIRQTSAG SYLALDPAIT QAFLERVRQT VGDLAQMQNR
      661 PVLIVSMDIR RYVRKLVESD YAGLPVLSYQ ELTQQINIQP LGRIVL
//