LOCUS       QJU60955.1               553 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 type IV secretory system conjugative
            DNA transfer family protein protein.
ACCESSION   CP053347-16
PROTEIN_ID  QJU60955.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 22113)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 22113)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /plasmid="unnamed1"
                     /geo_loc_name="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_23890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019086529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MIWVRLTGRA FRNMLRWVAR DPLSAVHAIL FSPMRVLKHL IGVVVIFLVA TLVLSSASTS
       61 LLYFAKVRDG SPIGSIVQIG TMLILVGLLF RALVKPMVMR FGFEGGDSDT HGSARFATRD
      121 ETRALDRTDG LLIGRDLKTK RLMRYAGPAH LLTIAPTRSG KGVGTIIPNL LEYPFGLVCI
      181 DPKGENARIA ARQRSRFGPV HILDPFGITG VVGAAAYNPL DRIDPQGLDH ADDCMTLADA
      241 LVHDAHNEMS EAHWNEEAKA LIAGLLLHIV ETEPLATRTL ATLRDRLTLA PAAFEKLLND
      301 MQAQGGLVAR AANRHLGKSD REAAGVLSSA QRHTHFLDSP RMTAALGRSD FAFADIKSAP
      361 ATIFLVLPPD RLDTYARWLR LMIAQALTEL ARVPGKAPWP VLFLLDEFAA LGHLEPVERA
      421 MGLMAGYGIQ LWPILQDIHQ LRALYGQRAG TFLSNAGVLQ IFGVNDQQSA QLVSDLLGQE
      481 TVVFETVSRA IDAEESGLSF TQHHTARALL TPDEVRTLKP DRQLLFLAGQ RPIIATKLRY
      541 YADREFAGRF DQA
//