LOCUS       QJU59434.1               872 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 methionine synthase protein.
ACCESSION   CP053346-3604
PROTEIN_ID  QJU59434.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /geo_loc_name="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /gene="metH"
                     /locus_tag="HL653_18235"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MTDTTVSRAT FVNIGERTNV TGSAAFKKLI MAGDYTKAID VARAQVENGA QVIDVNMDEG
       61 LLDAHHAMTT YLKLIAAEPD IARVPVMIDS SKWSVIEAGL KCVSGKPIVN SISMKEGEAE
      121 FLKYARKVMN YGAAVVVMAF DETGQADTKE RKIEICERAY KLLMGIGFPP EDIIFDPNVF
      181 AVATGIEEHN NYGVDFIEAT REIRARCPHV HISGGLSNLS FSFRGNEPVR RAMHSVFLYH
      241 AIPAGMDMGI VNAGQLDVYD QIDPKLREAC EDVILNRDPD AGERLVALAE SFRGTDAVAE
      301 KAAEEWRGWD VVKRLEHALV KGIDAHVVAD TEEARQQIFD RGGRPIEVIE GPLMDGMNVV
      361 GDLFGSGKMF LPQVVKSARV MKKAVAHLLP YIEAEKQEGA RAKGRVIMAT VKGDVHDIGK
      421 NIVGVVLQCN GYDVIDLGVM VPWPDILKAA NENDADMIGL SGLITPSLDE MVTVAEEMQR
      481 SSMTMPLLIG GATTSKVHTA LRIAPKYTGP VVHVLDASRA VGVASTLMSD TQRDAFVLKT
      541 AEDYEAVRIA REGKPQNALL TLQQARDNSF TLDESLKPGR PRMPGVHVFE DWDLKDLRQY
      601 IDWTPFFRAW ELAGNFPAIL EDEIVGESAR SLYADAQKML DKVIEDRWLV AKGVCGLWPC
      661 RREGDDVIVH MPDESHVKLP FLRQQIAKRE GRASMCLADF ISHDGDWIGG FAVSIHGIEP
      721 HLARFRAAID DYSDILLKAL ADRLAEAFAE RLHHYVRSAL WGYAEGEQLT NEALIKEQYR
      781 GIRPAPGYPA CPDHSLKPTL FKMLDAHHAT GISLTESFAM LPTAAVSGFY FGHPDSQYFG
      841 VARIGQDQVE DYAARRGVDL ATAERWLRPN LD
//