LOCUS       QJU58953.1               793 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 TonB-dependent receptor protein.
ACCESSION   CP053346-3023
PROTEIN_ID  QJU58953.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /geo_loc_name="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_15305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MIRSTALASV ALAALVSFAS TAAQAEAGAA ADAAAPDAPA ADAGDAAGQG DEITVLGFGR
       61 ARQVQEVTKL DIERLVPGAS PLKAISKLPG VNFQAADPFG NYEWAVRISL RGFNQNQLGF
      121 TLDDVPLGDM SYGNVNGLHI SRAIISENVG RTAVSQGAGA LDTASTSNLG GTIQFYSDAP
      181 KDKTDISVAG TYGADDMARA YVRLDSGDMT GNGLKGYLSY AFYRTDKWKG AGAQRQHQAN
      241 AKLVQDLGDL GSISAFLNFS DRRETDYQDL SLDIIAPRGL RNDNFTKTSD YATAIALAKA
      301 YQNQVSIAAG TGRVWAGAAT SLPAGVTIDD QYFDAGGLRR DYLGGVTFDA HLTPEFTLKT
      361 TGYYHTNKGQ GSWITPYSPT PAGAFNEDGS VITAPSPLGF RTTEYSIHRG GVLSSGTWEH
      421 GINTFVIGGW YESNSFRQAR RFYGMTDSAQ PNRDTLSFQK NAYLTQWDGK YDTETAQYNV
      481 SDTIKLLDDT LVLNGGWKGV YVVNRADMTV AGGLASGRIS AKDMFQPQAG VVYHATSSTE
      541 LFADYTENMR AFVGSATTGP FSTTQVGFNA IRGQLKPERS KTYEGGVRFR HGPLQASAVG
      601 YYVDFTNRLL AFQNGAGIIG NPSTLNNVGG VHTYGAEVTA NYRILPPLSL FASYSYNNSK
      661 YADDVVSATG AVLVATDGKT AVDSPKHMLK GEVVYDDGQI MARVGADYMT KRYFTYLNDQ
      721 SVPDRVLVDA SVGYTFRGTG ALNGVGISVN VTNLTDKKYV STIGSNGFTA SGDNQTLLAG
      781 APRQWFVTLK KGF
//