LOCUS       QJU56537.1               576 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 class I poly(R)-hydroxyalkanoic
            acid synthase protein.
ACCESSION   CP053346-184
PROTEIN_ID  QJU56537.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /geo_loc_name="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /gene="phaC"
                     /locus_tag="HL653_00940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAKATDKPHD GGALLDEMAH WTGVIGQAQQ MMMEHGASAA IKAGDEFVAS MAQMPLGDPA
       61 GLANAPGMMW AETLGFWRSM MPDSKLPAAD GRFTAPDWQE PLFDLIRQSY AMVADQFLSA
      121 IDHAPGLDAR QQEQLRFAAR NFVDAMSPTN FPFTNPQVVA KIVETRGQNL ITGLQRMMDD
      181 MTAGQIRHVG KDAFEVGRNI AMTPGKVVYE APLFQLIQYS PTTESVSEIP IIIFPPWINR
      241 FYILDLAPQK SFVKWATDQG LTVFMVSWKS ADASTAHVVM DDYILHGEWE AIEVVTRLLD
      301 VPSTHVIGYC VAGTALSMLL AWAHATGRAD KVASATFFTA QVDFSEAGDL SLFVDDAQLA
      361 LMESIAKDGV FDGRYMAATF NLLRSRDLIW NYVVNNYLLA DDYKSFDLLH WNSDVTNLPA
      421 EWQRRYLAEL YRDNLLVKPG ALSVAGTPID LTTVKTPAYV QAGREDHIAP PGSVWKLTHY
      481 LAGPLRFVLA GSGHIAGVVN PPSAQKYQYW TNEAKVDTLD AFVAGAAEHK GSWWPDWRAW
      541 LATQDGGTVP AEGARIPGEG PLPAIEDAPG RYVRMR
//