LOCUS       QEO15446.1              1225 aa    PRT              BCT 10-SEP-2019
DEFINITION  Agromyces intestinalis transcription-repair coupling factor
            protein.
ACCESSION   CP043505-2795
PROTEIN_ID  QEO15446.1
SOURCE      Agromyces intestinalis
  ORGANISM  Agromyces intestinalis
            Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
            Agromyces.
REFERENCE   1  (bases 1 to 3800200)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 19306
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3800200)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            Korea, Republic of
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2019
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 174.0x
            Sequencing Technology  :: PacBio RSII; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 09/03/2019 16:08:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,466
            CDSs (total)                      :: 3,410
            Genes (coding)                    :: 3,349
            CDSs (with protein)               :: 3,349
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 7 of 61
            Pseudo Genes (incomplete)         :: 55 of 61
            Pseudo Genes (internal stop)      :: 0 of 61
            Pseudo Genes (multiple problems)  :: 1 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Agromyces intestinalis"
                     /mol_type="genomic DNA"
                     /strain="KACC 19306"
                     /isolation_source="gut of larva"
                     /host="Protaetia brevitarsis seulensis"
                     /culture_collection="KACC:19306"
                     /type_material="type strain of Agromyces intestinalis"
                     /db_xref="taxon:2592652"
                     /country="South Korea: Jeonju"
                     /collection_date="2017"
                     /collected_by="Soo-Jin Kim, Soon-Wo Kwon"
                     /identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
     protein         /gene="mfd"
                     /locus_tag="FLP10_14165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018191601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MNLQGLSTAL SRASTIDAAL DQAQRNADFS APSGLDAPLL AALLGRRADA GLPPVLFAIT
       61 ATSREGEALR ASLAPYLPDD AELLEFPAWE TLPHERLSPS AETVGRRLHA LRRLHERAEQ
      121 VAAGDVEAQH PLVVVASVRA ALQPIADNLA SLEPIELAAG ARDYDLAAIS ARLVDLAYSR
      181 VDLVSRRGEF AVRGGILDVF PPTADHPVRV EFFGDEVEEI RAFSVADQRS LPEPVDRVRL
      241 APSRELLLTA SVRQRAREMV HEFPSLSGML EKLAEGIPVE GMESLAPALI DRLVPVTRYL
      301 PVGAVVAVLA PERVEGRAVS LGETNREFLA AAWSAATMGA GAPIDLAAGD FLSVADLREA
      361 TLFSAPGEPD PQRAWWTFSS FDAGEAAEDA AGPDASYVRV AANAMPSFQG NVEGAVAHVG
      421 RRLRDGWSLV VASAGHGLVE RARDVLADSG LAARIVDEVP ADLEPGVAYL VQADAARGYE
      481 VPEVKLGLLA EAEFYGRAAG YDARQGKKLA TRRRNVVDPL QLKAGDYVVH STHGIGRFVE
      541 LVQREVATGA RPTGPTRTGI KQQPKAVREY LVLEYAPSKR GQAGDRLYVP MDQLDLLSRY
      601 VGGEAPSLSK MGGSDWSQAK SRARRAVRDI AVELVKLYSA RMASKGHAFG PDTPWQHELE
      661 EAFPYAETHD QLQTIDEVKA DMERPIPMDR LLAGDVGFGK TEVAVRAAFK AIQDGKQVAM
      721 LVPTTLLVKQ HFETFSERFA GFPVHVRALS RFQTDKEARE TVAGLADGTV DLVIGTHRIL
      781 TEKLRFKDLG LMIIDEEQRF GVEHKETLKK LKTNVDILAM SATPIPRTLE MAVTGIREMS
      841 TLATPPEDRH PILTYVGPYT DQQVAAAIRR EMLREGQVFF VHNRVSSINR VAAQIAELVP
      901 EARIAVAHGQ LNEHVLDQIV NDFWERKFDV LVSTTIIETG LDITNANTII IDRADKYGLS
      961 QLHQLRGRVG RGRERAYAYF LYDPNKPLSE TAHDRLSTIA ANNELGGGMQ IALKDLEIRG
     1021 AGNLLGAEQA GHIAGVGFDL YLRMIGEAVS AFRGDVAEGQ TELRLELPVD AHIPDDYVDS
     1081 ERLRLEAYQK LSAASGPAAK DGQIDQVLEE IVDRYGEPPE AVQHLVAVSR LRRQAQLAGL
     1141 SDVIATGTKL RLAPAKLPDS RRVRLERMYP GAKVFAQNDV ILVPFPTPGG EAPGDADLIG
     1201 WVSRLIEVIF PAEQPSPEAS ATAAS
//