LOCUS       QDH17945.1               800 aa    PRT              BCT 02-JUL-2019
DEFINITION  Swingsia samuiensis TonB-dependent receptor protein.
ACCESSION   CP038141-401
PROTEIN_ID  QDH17945.1
SOURCE      Swingsia samuiensis
  ORGANISM  Swingsia samuiensis
            Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
            Acetobacteraceae; Swingsia.
REFERENCE   1  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     The complete genome sequence of Swingsia samuiensis NBRC107927(T)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2019) Institute of Biological Sciences,
            University of Malaya, University of Malaya, Kuala Lumpur, Kuala
            Lumpur 50603, Malaysia
COMMENT     Bacteria and source DNA available from NBRC.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-MAR-2019
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: Swingsia_samuiensis
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 625.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2019 13:37:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,097
            CDSs (total)                      :: 2,019
            Genes (coding)                    :: 1,987
            CDSs (with protein)               :: 1,987
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 16 of 32
            Pseudo Genes (incomplete)         :: 17 of 32
            Pseudo Genes (internal stop)      :: 8 of 32
            Pseudo Genes (multiple problems)  :: 8 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Swingsia samuiensis"
                     /mol_type="genomic DNA"
                     /strain="AH83"
                     /isolation_source="Plant"
                     /host="Allamanda cathartica"
                     /type_material="type strain of Swingsia samuiensis"
                     /db_xref="taxon:1293412"
                     /country="Thailand: Samui Island"
                     /collection_date="14-Mar-2007"
     protein         /locus_tag="E3D00_02125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008852435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MPISGLCAAP THFSKNTKPH IPSHVHPKAA PKTEVSGGSE SVIVTGTREF GKKARDSISP
       61 IDVVSNKQIT STGQPTLRDA LSLLLPSLTI PTSGFDAGAL TDTIALRGLN PNETLILVDG
      121 KRRHTTANIY ADPGPSQGST PVDIDMIPMS MIDHIEVLKD GASAMYGSDA VAGVVNIILK
      181 KQARGLHMRS NSGITSEGDG FQQGVFLDGG FNLHDRGFVH IGGDLVRQDH ALRSAADSRT
      241 GTYVNKVLSQ PEQTRQSVAI NAGYNITDHI QAYVTGTYAH RHAESFQNYR TPSSLSKYPG
      301 YAAIFPDGYS PILALEENDY EITTGLKGTL SGWHWDLSTV YGRDYNQFDA LNTTNTAVYT
      361 ATGRTPTRFD TQGYNNSQWT SSFDLSRKFN LSFWPHSINV AGGAAYRYES YSVGTGSPDS
      421 TLGTGADAVP GTQPYNAGNW SRDVTSGYID LATHLMKHWS LDLAGRVEHY TDIGDAKTGK
      481 VATRYDFSKR FAIRGTFSNG FHAPTLPQQH YSALAISPNA ARGLIANSSP GALANGASSL
      541 KPEYSTSVEG GIVAEPIKKL HITADAYQID LRDRIMPGGN VRGAAAYNTL LADGFPLPAS
      601 AASWQEGQLS AHWFANVANT RTQGLDITAT YPVELHQFGH IDWDTAINLN RTRMRHQASS
      661 STGQGLLDAQ YVAYMTTAFP RSKIIFGAQW RSPHNKWNVG VHEIRYGQTT SQLTYYSGPN
      721 AFSGGFREFK NAPKWTTNAS VTYNINHHWS ATIGGNNIFA AFPSAVPKEN RYLGAPQYYM
      781 STNQLGILGG YYYLDVSARF
//