LOCUS       QDH17588.1               962 aa    PRT              BCT 02-JUL-2019
DEFINITION  Swingsia samuiensis TonB-dependent receptor protein.
ACCESSION   CP038141-1626
PROTEIN_ID  QDH17588.1
SOURCE      Swingsia samuiensis
  ORGANISM  Swingsia samuiensis
            Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
            Acetobacteraceae; Swingsia.
REFERENCE   1  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     The complete genome sequence of Swingsia samuiensis NBRC107927(T)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2019) Institute of Biological Sciences,
            University of Malaya, University of Malaya, Kuala Lumpur, Kuala
            Lumpur 50603, Malaysia
COMMENT     Bacteria and source DNA available from NBRC.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-MAR-2019
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: Swingsia_samuiensis
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 625.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2019 13:37:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,097
            CDSs (total)                      :: 2,019
            Genes (coding)                    :: 1,987
            CDSs (with protein)               :: 1,987
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 16 of 32
            Pseudo Genes (incomplete)         :: 17 of 32
            Pseudo Genes (internal stop)      :: 8 of 32
            Pseudo Genes (multiple problems)  :: 8 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Swingsia samuiensis"
                     /mol_type="genomic DNA"
                     /strain="AH83"
                     /isolation_source="Plant"
                     /host="Allamanda cathartica"
                     /type_material="type strain of Swingsia samuiensis"
                     /db_xref="taxon:1293412"
                     /country="Thailand: Samui Island"
                     /collection_date="14-Mar-2007"
     protein         /locus_tag="E3D00_08455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016737731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MNASRRNVLL CASILSVGAF SSPAIAAAEH VHAKRHLLHH KPQLRSRAVS NAPVVSGVTP
       61 ASSVGTVQRA RVGKNTLASV ESTHAEEVTV TGSMLSTSRN ANANPVQIVT SKQIMQSGST
      121 TMGDFLARLP SIGSNSTNNT NTNGGGGVSC ADIRNLGQQR VLVLIDGKRT AVNGSSNCVD
      181 MNTIPVQLVK QVEILKDGGS ELYGADAVSG VINIKLRHDI STGNITMRGG IAGQGDDKTG
      241 MISAYKGWNF DDRKGNITLF GSYMTQGGVR QRNRSWADPV QNDLGGSSFG SAYTPQGRVY
      301 DVSGNLMPGQ KTTRYDFSQD QMLLNRLQNA TLSGDAHYKF DKHFNLYSNV LYSHRNSYTQ
      361 MAAEPSAGSI PPSNYASLLY INKENPFNTY GQDVTLRKRY NEFGPRKTED ASDTYTAKVG
      421 LDGEIIHNWM YDASYTYGWN QDTSHMVNMG NYAHLMQVYG MDQLDPNDPN SAIMYNPGVC
      481 QGSAGCALAN PFAPLSGQAL EYANATLNNH SYYQLRDWNV RIHNNKVARL PWKNGGDFAV
      541 AMGMERRSES ETFKPDPLIT SGQSMTNTQN YTGGGFHVWE GYLEGKLTLL KNTTMAKDLS
      601 IDGQGRYSSY NTFGSAKNWK AAINWSPVRD VHFRGTLGTS TRQPSVYELY GGQSMSYATA
      661 MDPCDMNQVG TYGAQSSTVA LNCAQQGINS QNFQMATSSQ VPSIVGGNSK LRPELGRTYT
      721 FGVELTPRWV RGFSASVEYW HTRVKNTISA IPTQYLLDQC YTGANTGYCS SILRNSQGQI
      781 QTATTLDANL GGLRTGGIDF DMDYHLRVTP RDMVLLSNNL QDTISYQQQY LPGGEWYNYT
      841 GRLQYNNAVG FPRIRDYATL TWQHGPIGLT YMMQYTSGMV WNTTQQDVVP GNGVGRWKTP
      901 GMFQHDVTLN YRLNRWNFEA GIQNIANKKP PFVASGQDNS MGNLYGGFYP GRYFFTQAGL
      961 NF
//