LOCUS QDH16991.1 518 aa PRT BCT 02-JUL-2019 DEFINITION Swingsia samuiensis carbohydrate porin protein. ACCESSION CP038141-951 PROTEIN_ID QDH16991.1 SOURCE Swingsia samuiensis ORGANISM Swingsia samuiensis Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Swingsia. REFERENCE 1 (bases 1 to 2163214) AUTHORS Chua,K.-O., Chan,K.-G. and See-Too,W.-S. TITLE The complete genome sequence of Swingsia samuiensis NBRC107927(T) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2163214) AUTHORS Chua,K.-O., Chan,K.-G. and See-Too,W.-S. TITLE Direct Submission JOURNAL Submitted (20-MAR-2019) Institute of Biological Sciences, University of Malaya, University of Malaya, Kuala Lumpur, Kuala Lumpur 50603, Malaysia COMMENT Bacteria and source DNA available from NBRC. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 19-MAR-2019 Assembly Method :: HGAP v. 4 Assembly Name :: Swingsia_samuiensis Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 625.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/21/2019 13:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 2,097 CDSs (total) :: 2,019 Genes (coding) :: 1,987 CDSs (with protein) :: 1,987 Genes (RNA) :: 78 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 56 ncRNAs :: 4 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32 Pseudo Genes (ambiguous residues) :: 0 of 32 Pseudo Genes (frameshifted) :: 16 of 32 Pseudo Genes (incomplete) :: 17 of 32 Pseudo Genes (internal stop) :: 8 of 32 Pseudo Genes (multiple problems) :: 8 of 32 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Swingsia samuiensis" /mol_type="genomic DNA" /strain="AH83" /isolation_source="Plant" /host="Allamanda cathartica" /type_material="type strain of Swingsia samuiensis" /db_xref="taxon:1293412" /country="Thailand: Samui Island" /collection_date="14-Mar-2007" protein /locus_tag="E3D00_05005" /inference="COORDINATES: protein motif:HMM:PF04966.10" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKILRHSLAS VTRYKKRVAA LSVLLVTTSI TPYSFANTLT NNELHLSHQK KILKPHLSPQ 61 QEQHMATISK ERAEEREKSI IADKKMASIY TAWPLLPTTT KRNQLTRTTD PSKSDNLFGD 121 WWGMRSYLEK NGIGLSVNYL GEMAANVSGG MRKGADYAGQ VSAAIDLNWE TLIGWKGFSS 181 HVLFMNRSGR PAGRDYVGDS IFNENEIYGA GGNVVAHLAY AYVQQMLWKN RIGIIAGRTG 241 AAVYFNSSPI YCHFLSFGMC PTPRTITGGS SNAFVMPPQH NWAAFTGLTL PYNTYIRTGI 301 SAVGGQLGGH SGFNWSNHGV NGVMIPAEIG WTPSYGKNKN PIHLKAGFYG STASAPDVAV 361 NTTGQILAIR GGDAQQHRGY FAEWAGGDVM LLRHGSDPDE GLILFADYTH TNNKISIYQD 421 MGLIGFEDRG FWKKRPLDSA GLMFIYSKQS QWLQNRLSDD PRTAKMAQSH TSIIELQYGL 481 HAMRGIVIVP DFQYVFRPGG AGRYNDAAVL GLRLQAAL //