LOCUS       QDH16486.1              1390 aa    PRT              BCT 02-JUL-2019
DEFINITION  Swingsia samuiensis DNA-directed RNA polymerase subunit
            beta protein.
ACCESSION   CP038141-383
PROTEIN_ID  QDH16486.1
SOURCE      Swingsia samuiensis
  ORGANISM  Swingsia samuiensis
            Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
            Acetobacteraceae; Swingsia.
REFERENCE   1  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     The complete genome sequence of Swingsia samuiensis NBRC107927(T)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2019) Institute of Biological Sciences,
            University of Malaya, University of Malaya, Kuala Lumpur, Kuala
            Lumpur 50603, Malaysia
COMMENT     Bacteria and source DNA available from NBRC.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-MAR-2019
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: Swingsia_samuiensis
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 625.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2019 13:37:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,097
            CDSs (total)                      :: 2,019
            Genes (coding)                    :: 1,987
            CDSs (with protein)               :: 1,987
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 16 of 32
            Pseudo Genes (incomplete)         :: 17 of 32
            Pseudo Genes (internal stop)      :: 8 of 32
            Pseudo Genes (multiple problems)  :: 8 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Swingsia samuiensis"
                     /mol_type="genomic DNA"
                     /strain="AH83"
                     /isolation_source="Plant"
                     /host="Allamanda cathartica"
                     /type_material="type strain of Swingsia samuiensis"
                     /db_xref="taxon:1293412"
                     /country="Thailand: Samui Island"
                     /collection_date="14-Mar-2007"
     protein         /gene="rpoB"
                     /locus_tag="E3D00_02035"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007282712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MNAITKSFTG RKRIRKSFGH IPEIAPMPNL IDVQRASYEA FLQMHVSPDA RQNAGLQEVF
       61 RSVFPINDFA GRGRLDFVSY EFEEPKYDVE ECIQRGLTYA APLKVILRLT TWDIDEDTGS
      121 RSIHDLKEQP VYMGDMPLMT DNGTFIINGT ERVIVSQMHR SPGVFFDHDK GKTHSSGKYL
      181 FAARVIPYRG SWLDFEFDAK DLIYVRIDRK RKLPVTTLLY ALEGANSILA REKKIAEGGD
      241 VDALDVYGMD QDEILAYFYG VVPFTRLNDG WARPFEPEAF RGMKLLSPLV DADTGEVVAE
      301 AEAKLTARMV RKIAEKTRVV QVGRLDILGR FLAHDLVNEE TGEIYGEAGE ELTEERLAAL
      361 EEIGVTELPT LAVDGSHGPW IRNTLSVDKN TSRDEALIDI YRIMRPGEPP TKETAEAMLN
      421 GLFFDSDRYD LSSVGRVKMN MRLDVDAPDT LRVLRKEDIL RTIKIMCDLK DGRGQVDDID
      481 NLGNRRVRSV GELMENQYRI GLLRMERAIR ERMGSVDIDT VMPHDLINAK PAAAAVREFF
      541 GSSQLSQFMD QTNPLSEVTH KRRLSALGPG GLTRERAGFE VRDVHPTHYG RICPIETPEG
      601 PNIGLINSLA TYAKVNKYGF IETPYRLVKD GTLQDGWKYL SAMQEEKLVV AQADAKQDQD
      661 GRLTDELVSV RRSGDFRVVP PEQVTACDVS PKQLVSVAAA LIPFLENDDA NRALMGANMQ
      721 RQAVPLVRAD APLVGTGMEA AVARDSGATI VAKRRGIVDQ IDGARIVVRA TDDAGSTQGV
      781 DIYRLHKYMR SNQSTCINQR PLVKVGDTVH SGDIIADGPS TELGELALGR NVLVAFMPWN
      841 GYNFEDSILI SERIARDDVF TSIHIEEFEV MARDTKLGQE EITRDIPNVG EEALRNLDEA
      901 GIVYVGAEVN PGDILVGKVT PKGESPMTPE EKLLRAIFGE KASDVRDTSL KLPPGTSGTI
      961 VDVRVFSRRG VDKDERAMAI ERAEIERLTK DRDDERSIQE RSFYNRLRER LVGQVAGAGF
     1021 KGIRSGTPIT REVLEEHPRG AWRNISVASD EVTAELERLR SEFDAAVGKI NARFDNKVEK
     1081 LQRGDELPPG VMKMVKVFVA VKRKLQPGDK MAGRHGNKGV VSRVVPVEDM PFLENGQAVD
     1141 IVLNPLGVPS RMNIGQILET HLGWACANIG SSIGDMVDEY QRTGERKQEL LDRLREVYGD
     1201 EIFNSDVATL PNEQLIELAN NLRKGLPIAT PVFDGASIPD IEDMLVKAGV DKSGQSQLID
     1261 GRTGEPFERQ TTVGYIYMLK LHHLVDDKIH ARSIGPYSLV TQQPLGGKAQ FGGQRFGEME
     1321 VWALEAYGAA YTLQEMLTVK SDDVSGRTKV YEAIVREQDD FEAGIPESFN VLIKELKSLG
     1381 LNVELEQSAL
//