LOCUS CTQ87052.1 895 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Smad protein daf-3 protein. ACCESSION BX284606-175 PROTEIN_ID CTQ87052.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="daf-3" /locus_tag="CELE_F25E2.5" /standard_name="F25E2.5d" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00000899" /db_xref="EnsemblGenomes-Tr:F25E2.5d" /db_xref="GOA:A0A0K3AVK9" /db_xref="InterPro:IPR001132" /db_xref="InterPro:IPR003619" /db_xref="InterPro:IPR008984" /db_xref="InterPro:IPR013019" /db_xref="InterPro:IPR013790" /db_xref="InterPro:IPR017855" /db_xref="InterPro:IPR036578" /db_xref="UniProtKB/TrEMBL:A0A0K3AVK9" /db_xref="WormBase:WBGene00000899" intron_pos 9:1 (1/14) intron_pos 72:1 (2/14) intron_pos 106:1 (3/14) intron_pos 158:1 (4/14) intron_pos 209:0 (5/14) intron_pos 289:0 (6/14) intron_pos 334:0 (7/14) intron_pos 554:1 (8/14) intron_pos 598:0 (9/14) intron_pos 638:2 (10/14) intron_pos 656:1 (11/14) intron_pos 713:2 (12/14) intron_pos 816:0 (13/14) intron_pos 861:2 (14/14) BEGIN 1 MGDHHNLTGL PGTSIPPQFN YSQPGTSTGG PLYGGKPSHG LEDIPDVEEY ERNLLGAGAG 61 FNLLNVGNMA NEFKPIITLD TKPPRDANKS LAFNGGLKLI TPKTEVPDEH TPMMSPVNTT 121 TKILQRSGIK MEIPPYLDPD SQDDDPEDGV NYPDPDLFDT KNTNMTEYDL DVLKLGKPAV 181 DEARKKIEVP DASAPPNKIV EYLMYYRTLK ESELIQLNAY RTKRNRLSLN LVKNNIDREF 241 DQKACESLVK KLKDKKNDLQ NLIDVVLSKG TKYTGCITIP RTLDGRLQVH GRKGFPHVVY 301 GKLWRFNEMT KNETRHVDHC KHAFEMKSDM VGEVCVNPYH YEIVIGTMIV GQRDHDNRDM 361 PPPHQRYHTP GRQDPVDDMS RFIPPASIRP PPMNMHTRPQ PMPQQLPSVG ATFAHPLPHQ 421 APHNPGVSHP YSIAPQTHYP LNMNPIPQMP QMPQMPPPLH QGYGMNGPSC SSENNNPFHQ 481 NHHYNDISHP NHYSYDCGPN LYGFPTPYPD FHHPFNQQPH QPPQLSQNHT SQQGSHQPGH 541 QGQVPNDPPI SRPVLQPSTV TLDVFRRYCR QTFGNRFFEG ESEQSGAIIR SSNKFIEEFD 601 SPICGVTVVR PRMTDGEVLE NIMPEDAPYH DICKFILRLT SESVTFSGEG PEVSDLNEKW 661 GTIVYYEKNL QIGEKKCSRG NFHVDGGFIC SENRYSLGLE PNPIREPVAF KVRKAIVDGI 721 RFSYKKDGSV WLQNRMKYPV FVTSGYLDEQ SGGLKKDKVH KVYGCASIKT FGFNVSKQII 781 RDALLSKQMA TMYLQGKLTP MNYIYEKKTQ EELRREATRT TDSLAKYCCV RVSFCKGFGE 841 AYPERPSIHD CPVWIELKIN IAYDFMDSIC QYITNCFEPL GMEDFAKLGI NVSDD //