LOCUS CCD71958.1 1603 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Vitellogenin-4 protein. ACCESSION BX284606-770 PROTEIN_ID CCD71958.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="vit-4" /locus_tag="CELE_F59D8.2" /standard_name="F59D8.2" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00006928" /db_xref="WormBase:WBGene00006928" intron_pos 289:0 (1/5) intron_pos 384:0 (2/5) intron_pos 1396:2 (3/5) intron_pos 1473:0 (4/5) intron_pos 1518:1 (5/5) BEGIN 1 MKSIIIASLV ALAIAASPAL DRTFSPKSEY VYKFDGLLLS GLPTTFSDAS QTLISCRTRL 61 QAVDDRYIHL QLIDIQYSAS HIPQSEQWPK IESLEQRELS DELKELLELP FRAQIRNGLV 121 SEIQFSSEDA EWSKNAKRSI LNLFSLRKSA PVDEMSQDQK DMESDKDSLF FNVHEKTMEG 181 DCEVAYTIVQ EGGKTIYTKS VNFDKCITRP ETAYGLRFGS ECKECEKEGQ FVQPQTVYTY 241 TFKNEKLQES EVNSIYTLNV NGQEVVKSET RAKVTFVEES KINREIKKVS GPKEEIVYSM 301 ENEKLIEQFY KQGDKAEVNP FKAIEIEQKV EQLEEIFRQI QEHEQNTPET VHLIARAVRM 361 FRMCTIEELK KVHTTIYTKA EKKVQLVIET TLAVAGTKNT IQHLIHHFEK KSITPLRAAE 421 LLKSVQETLY PSEHIADLLI QLAQSPLSEK YEPLRQSAWL AAGSVVRGFA SKTQDLPLIR 481 PASRQTKEKY VRVFMQHFRN ADSTYEKVLA LKTLGNAGID LSVYELVQLI QDPRQPLSIR 541 TEAVDALRLL KDVMPRKIQK VLLPVYKNRQ NKPELRMAAL WRMMHTIPEE PVLAHIVSQM 601 ENESNQHVAA FTYNVLRQFS KSTNPCYQQL AVRCSKVLLF TRYQPQEQML STYSQLPLFN 661 SEWLSGVQFD FATIFEKNAF LPKEVQASFE TVFGGNWNKY FAQVGFSQQN FEQVILKTLE 721 KLSLYGKQSD ELRSRRVQSG IQMLQEIVKK MNIRPRVQQT DSQNAHAVFY LRYKEMDYIV 781 LPIDMETIDN VVEKYVRNGE FDIKSLLTFL TNDSKFELHR ALFFYEAERR IPTTIGMPLT 841 ISGKMPTILS INGKVSIELE KLGARLVLDI VPTVATTHVT EMRFWYPVIE QGVKSLQSAR 901 LHTPLRFEST VELKKNTLEI THKFVVPENK KTTVSVHTRP VAFIRVPKNQ DSEYVEAEEK 961 TISHSQYQMS TEEIDRQYET FGLRINAQGN VLSQWTLPMV LMTEQDFEFT LENKNRPVEF 1021 TARVTIGNLE KTDLSEIKFD KIFEKEFDLE NNESENRRQY FHKMIREIQS EQGFKNLITL 1081 KLEAPQQMYW NTELRTVCDK WIRMCKVEMD ARRSPIEHEN KEWTLRTELL AARPQMPSSL 1141 RQLREQPHRE VQLALNAKWG SSKKSEITFN AQLEQSTEQK KFLRNIEREY KGIPEYELLI 1201 KAARLNQVNV VSEYKLTPES EYTFSRIFDL IKAYNFWTVS EKRVQNEDRR VVLQLSVEPL 1261 SRQYMNMTIQ TPEQEVELKN VRIPRVVLPT IARRAMFQQT WEKTGATCKV DQSEVSTFDN 1321 VIYRAPLTTC YSLVAKDCSE QPRFAVLAKK INKNSEELLV KVVRREEEIV VKKSDDKFLV 1381 KVDGKKVNPT ELEQYNIEIL GDNLIVIRLP HGEVRFDGYT VKTNMPSVAS QNQLCGLCGN 1441 NDGERDNEFM TADNYETEDV EEFHRSYLLK NEECEVEKDR ISEKKNYKNK WNREEKKSDY 1501 ESSSDYESNY DEKETEKELV KKTLIKEFSN RVCFSIEPVS ECRRGLESEK TSNKKIRFTC 1561 MPRHSKNARR FLKEAREQTV ADLVDFPVSF VESVKIPTAC VAY //