LOCUS       CCD71781.1               599 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans IRS-type PTB domain-containing
            protein protein.
ACCESSION   BX284602-503
PROTEIN_ID  CCD71781.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 15279421)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 15279421)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 15279421)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="II"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="rog-1"
                     /locus_tag="CELE_F54D12.6"
                     /standard_name="F54D12.6a"
                     /note="Partially confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00018819"
                     /db_xref="EnsemblGenomes-Tr:F54D12.6a"
                     /db_xref="InterPro:IPR002404"
                     /db_xref="InterPro:IPR038742"
                     /db_xref="UniProtKB/TrEMBL:E6N0V1"
                     /db_xref="WormBase:WBGene00018819"
     intron_pos      53:1 (1/8)
     intron_pos      118:0 (2/8)
     intron_pos      166:1 (3/8)
     intron_pos      216:1 (4/8)
     intron_pos      262:2 (5/8)
     intron_pos      317:2 (6/8)
     intron_pos      473:0 (7/8)
     intron_pos      567:2 (8/8)
BEGIN
        1 MRAIISVAKS ILGNRRGDDE SLYTGAGPAG SGASHSFRVY IHGNRKKNEL VHAWLRVTRT
       61 TITLEISKKE CLVWPLPLIR RYGYTSAGIF FFESGRRCES GEGMFTFQSK KADEIFQLIQ
      121 SLIEEFANTS MEKQNMENSF RYQRQQSVPI SSRRMSNTSN TSSVFGLKYS SPPLMPIPSA
      181 RDRNSNTSLA SNFSIRNGSH TVRPMPSSVQ RFRSEVFAGM NSEVLTSSMN SSGFNDSIGY
      241 HSYHRSSFDP RSGRINTPMR PRSVTDTSDY ADESSSYGYP SSHHHHLPHD SFHALNNSVG
      301 MGGGGATRGS KLLGNIVTER TNPKASGISN GILPPYINIS PKEVPSSSRH HYYAATSSSS
      361 MTASAASEVS AALSAMNRDI SSGSGSSTAA SATATTSSKL PRCTPPPVSN RQLKRYAMVP
      421 GTSMSKRRIS REDAKRAFLS SDPRVGHVID DPRYAAVNVE ADENYANLRD IQTDKIMRGI
      481 DVETLTNLHT TTEPSPPLPR HHQIQASTTA GATSSSLSAA AGTRGTLKPS NGLMTARAAT
      541 ASPLPRLNYA QIVPVHDDGV VPDRESRCSS VGRFFDINYA QMDADRTQAL KGTLRQKKE
//