LOCUS CCD69992.1 1073 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans B-cell receptor CD22-like protein. ACCESSION BX284606-185 PROTEIN_ID CCD69992.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="igcm-1" /locus_tag="CELE_F39H12.4" /standard_name="F39H12.4" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00018215" /db_xref="EnsemblGenomes-Tr:F39H12.4" /db_xref="GOA:Q9TXI8" /db_xref="InterPro:IPR003598" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013098" /db_xref="InterPro:IPR013106" /db_xref="InterPro:IPR013162" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR036116" /db_xref="InterPro:IPR036179" /db_xref="UniProtKB/TrEMBL:Q9TXI8" /db_xref="WormBase:WBGene00018215" intron_pos 22:1 (1/15) intron_pos 74:2 (2/15) intron_pos 141:1 (3/15) intron_pos 178:2 (4/15) intron_pos 206:2 (5/15) intron_pos 339:0 (6/15) intron_pos 386:2 (7/15) intron_pos 461:0 (8/15) intron_pos 513:0 (9/15) intron_pos 799:0 (10/15) intron_pos 871:0 (11/15) intron_pos 931:1 (12/15) intron_pos 976:2 (13/15) intron_pos 1013:2 (14/15) intron_pos 1046:1 (15/15) BEGIN 1 MGGKRLFFLF FLFLVQLTNS ADSSDVFLKE PSSEPYFLQE GNEGIVIPCV VKPEYFDRQK 61 YEINWARYNN GQLRMITKND KLLAKKHSRF ILENDSATGN YSLRITEVEK NSVEGTYHCN 121 VIGTDDSDVQ YSALATVVVL VPPGDPIIST TPSESVIEGD FMTAKCVSVG GSPQPTFTWT 181 LPNDTIASSA IFTTQFRDGA TESLLHFRVT SSDDGKSVQC DVTNRAMLGG ETKQVKSSQL 241 NVLYKPVVFV TPTENLTHLS VEEGELVNLT CNSASNPPAH SYEWKHIASG ERYQGKIWPI 301 RVDSSMSGDF ECRSTNELGE GTAVLKMVVQ HIPRINVPES ISPNEMEDID ILCEVSAVPE 361 VIDIKWVGPN GFKQNGSRLT ITSISKAQSG NYTCMATNFL TVYGHSGSQQ RMGTGTTIVD 421 VKRKPGQAQI VSARQNVDVG ETIKLMCQAE DAGNPSASYT WASPSSGGIF GLEGHTEKSF 481 EVRNAQLSDN GVYSCKAYND LGEGKIGTVM ITVIEKARIS SPLATERIFT SGEQGKILEC 541 EAQGYPSPVI KWLKDGRPVK QSIYASSATS ESKCLPEDFC TQTVASTLTL AGPLKWSDKG 601 NFTCVADNGS DKTDKDSSSW TIVRVLHKPV FLNRKFPEKS LAAADIGSQA IIRCKVSARP 661 EPEFHWMFRD SEISENERHS FHTVGITGKP DEYEQLLQIE SVQESDYGEY VCRATNGNGG 721 DHVVIELRKT SPPALPLDLQ KLSATSNSVL LGWVPQFDGG ADQTYVLETR KIDPFTGEID 781 GNAPVSKLNI NAVQQDQEID GTLVSKNIFN FTGLTPLSTY NLRIQAVSEK GESEFTPVLI 841 ASTEDVVEDA NMMSPSRLVL DSSEQKINVE PKLPSDACTL LYVFLDGIWR TSTCHTSSNP 901 IGNIIPGREY RARFCTTANG LKCSPVSKTI SSGSGSVWKT NVFFPFLFFI FIGLAICVFF 961 LVCCKTRSNP KTSKLSPIIL TSLPGDELKR PADYEEPKHA TFAITENETN HLSQHDAKST 1021 KPPGLNMEYD VSTDCYLQEN TEVLKNTSLS GFTNGDVLEN SDEDRRIVRE IIV //