LOCUS CCD68929.1 955 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans NCAM (neural cell adhesion molecule) homolog protein. ACCESSION BX284606-144 PROTEIN_ID CCD68929.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ncam-1" /locus_tag="CELE_F02G3.1" /standard_name="F02G3.1c" /note="Product from WormBase gene class ncam" /note="Partially confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00017184" /db_xref="EnsemblGenomes-Tr:F02G3.1c" /db_xref="GOA:Q8MQ86" /db_xref="InterPro:IPR003598" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR009138" /db_xref="InterPro:IPR013098" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR036116" /db_xref="InterPro:IPR036179" /db_xref="UniProtKB/TrEMBL:Q8MQ86" /db_xref="WormBase:WBGene00017184" intron_pos 99:2 (1/11) intron_pos 145:1 (2/11) intron_pos 190:1 (3/11) intron_pos 239:1 (4/11) intron_pos 280:0 (5/11) intron_pos 332:1 (6/11) intron_pos 449:0 (7/11) intron_pos 503:1 (8/11) intron_pos 599:1 (9/11) intron_pos 875:1 (10/11) intron_pos 940:2 (11/11) BEGIN 1 MTLCLRCSSN LNYKQCAIVR FSSEVENGNR RIILIFFLLL LLILSGWTLS LSPTEERLQN 61 RRSGDNFLVV CKVKDFDGAA SDAKIEWYRD GKLIPRFGST MTIERTYSNQ LMINRPKISD 121 GGKYTCKTEI QGEQQEVSAE ISFVDPPKFL NVQESQHPEE GTRAEIVCEV EGTDQLEVFW 181 QFNGVTLDET SQRGYEFSEN NQILYIPHFT AKKDDGIYNC NAAQYSSFET LSVNVTGYAR 241 PTITVFDVPN GNRGIEGHTI ELKCGAVGKP KPTYKWFFED DEVPIARSDK HNVEEGLLII 301 ESLNSEDAGT YKCVANNTVG SNERTFDLAV FLKPKVDLKH EYVVKEGDDV ELVCSYHGEG 361 HVTAKFVSGH SEFAVRNEAV SAGNSEEIRP ESNESEEVTT TSENSEETST QDEVELKSAE 421 NVNDEEDHTS QQDDGEQDEQ EESKKWKRFA DDVNNQRISV RAEENKLILT IKSISLEDAA 481 DYTCAVSNDA GTVNKVTQVG IIHPPTLRHY TGPHIRSFDG NTVSVYCDVS AVPSPKWHWF 541 KNGKEVEANG VSIQIFTQGS STKLTLENFD GSDNFGVYTC RADNGVGQLE KQIDVIKVVS 601 PATPSGMNCK KMVYPNYGKC SFESDIYEKE ESKPQTMELL VAKLEEMESD YNWSHAQPVS 661 VPFEDDLTIP NLTSNTQYVI KARAVNEAGS SEYSEEISLE TTDPWAPQAP GSVAMKCSDY 721 CTVSWDTPND HGSPLLKFKV TIQEMKYKTD DDEVEEKSDE KSNNNSEETE TTTSDDNDET 781 EASNESIEIK ENSEEQETTL AHEDSAEILP TDPSTSVERD EMVPYGSLLV LNVDSEENQV 841 QLTNIKQHSY YKISVAAENE KGQGEPAEID FQTDDSPTKY EEGIDSTHLI IAIAIGVLFL 901 LLLVDLGCFI TNKCGLISCI CLNLCGKNAG AKQRDLESGR GGPESNRLLD SSGAR //