LOCUS       CCD67569.1               802 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Protein tincar protein.
ACCESSION   BX284606-1797
PROTEIN_ID  CCD67569.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="K09F5.6"
                     /locus_tag="CELE_K09F5.6"
                     /standard_name="K09F5.6a"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00044698"
                     /db_xref="EnsemblGenomes-Tr:K09F5.6"
                     /db_xref="GOA:Q95QC9"
                     /db_xref="UniProtKB/TrEMBL:Q95QC9"
                     /db_xref="WormBase:WBGene00044698"
     intron_pos      35:2 (1/10)
     intron_pos      109:1 (2/10)
     intron_pos      156:1 (3/10)
     intron_pos      333:0 (4/10)
     intron_pos      453:0 (5/10)
     intron_pos      481:0 (6/10)
     intron_pos      559:0 (7/10)
     intron_pos      669:0 (8/10)
     intron_pos      735:2 (9/10)
     intron_pos      800:0 (10/10)
BEGIN
        1 MTCVLRPRLN NLSSIWYTIL TTLLQSYLLY LGFERYRLYN EIKWPTGGYP YGYLMAYATI
       61 YLCCIIATFL FFTCGVFKSG NIAGDNERLA DREERVLEVS RNQNGEKSGC VHGAKVLWQH
      121 LPPLPQQLHV IIAVAQLIAQ QLMFSQLFRH GFVNSGDFLN TELDFLYQRS RQLATNLPIG
      181 ETRLQGFRIT ADELAGLPVS PNLLPVLMHM KLFGIPLEMV NLFIALVAFA IAYPAVFWRV
      241 SKPFSVIFSL HLVIYAAQVI WGYLSFSILF RIQETNIHSV RAVGLGQYLG PIKPLGFHIY
      301 HPYVILGSFV VRLVMTTLAP MAMYSYGYNK LYANVLNVQH RNAARTSQGQ AEYGDYRRRS
      361 YTRVDGNKLC CDGYLPHMDA IALLVIVAGA IGPTIYALLI LYQHEQKALI LTCIIIDVVY
      421 MFSWILMWLG MTLKRDWDFN VTHKVHQFYG LNKGMAIGPI RGNENPSQLK NSILVVHRDT
      481 MFVTDDQTAK QSLLRAIHSG KFEMISPPDD VYWRQGQQSP ATRAKILTEV DGVKNSPEMS
      541 RLLRMGTDDT QQTMSYHSNG GRNITQAQMT NSQILQRGNS SPPGPSQFGT IQRNQQQYSQ
      601 MGTLQRGQSG GTLQRGAMIH DNVWNQYSAI QKKDEQQQHM LGQRRDSGEA AYGRVDSTYG
      661 SYARIPNVSR IQVTPQGSQI RVNGYGGLQQ NTLQRREVTP TQHSQQPSLS SIRQSPLLSD
      721 RSGINVPPPQ PLVSREQSPY QRSAIKLSSF SENKGSGIYG TSGIGSGNNV QWGGAQRAAP
      781 GQPGQLLWNP PGATNGHNKE PY
//