LOCUS       CCD64606.1               690 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Putative glycerophosphocholine
            phosphodiesterase GPCPD1 homolog 1 protein.
ACCESSION   BX284606-664
PROTEIN_ID  CCD64606.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="gpcp-1"
                     /locus_tag="CELE_K10B3.6"
                     /standard_name="K10B3.6d"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00019612"
                     /db_xref="EnsemblGenomes-Tr:K10B3.6d.1"
                     /db_xref="EnsemblGenomes-Tr:K10B3.6d.2"
                     /db_xref="WormBase:WBGene00019612"
     intron_pos      49:2 (1/16)
     intron_pos      91:2 (2/16)
     intron_pos      124:1 (3/16)
     intron_pos      177:0 (4/16)
     intron_pos      203:0 (5/16)
     intron_pos      226:0 (6/16)
     intron_pos      264:0 (7/16)
     intron_pos      310:1 (8/16)
     intron_pos      358:2 (9/16)
     intron_pos      390:0 (10/16)
     intron_pos      431:0 (11/16)
     intron_pos      503:0 (12/16)
     intron_pos      546:2 (13/16)
     intron_pos      572:0 (14/16)
     intron_pos      603:0 (15/16)
     intron_pos      646:2 (16/16)
BEGIN
        1 MDQDYKAHFK VFCSEVREWE KIHVVGSLPV LGEWNPRKSF PLTKSTDEEN TFHAIVSVPS
       61 SIKEFNFRYI RVMYLDPSEN NTSEPIMVLS KWETFNNART CLIGVESQDG VARKNITDQF
      121 GSYSGKTQIT DGWILNEKES VVYFRIHGEA LKFFAKSYAN KEYRLKVEPF DVRYSEMFSY
      181 TRKDITDRRG VWRHSSVYAS MSIDGDDVVN LPTPSLPCFS NTDLSVLTRE DPIFGDQYFN
      241 GSVFRNDQDY LVFRTRTVSL QNLAFRIEFY HGEKRCALSY VLPSSMSGTH GATVSPVIGL
      301 SSAPVGHINV NYMIVKRNKY TDQNLDIDSM KTTFGRYWRK RNRMLQIGHR GMGSSYTKNI
      361 GQRENTIFSL NEAARRGADY VEMDVQLTKD LKTVVYHDFH VLVAVAGRDS PSSTPTAAGE
      421 NKSLHEIAIK DLTLAQLNLL HFEHISRANG SSAESPVALS VTPSKTETDE LHVPFPSLAQ
      481 VLRHVDENVG LNIEIKYPMY MQDGSHECQG YFEQNKFVDI ILAEVAEHAG NRRIIFSCFE
      541 PDICTMITKK QHKYPVSFLV VGATNRYMPF QDIRSDCSKI AANFAAGCEL LGVNFHSEEL
      601 LIDQKPIEIA EKYGLIKFVW GDDLNSKEVQ KHFRDEMNVD GLIFDRIGED EVLKQNVFVV
      661 ENHNRSSLFA RSQHNSRSPS MSRRCMSTVE
//