LOCUS       CAD57691.1               795 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Neuroligin-1 protein.
ACCESSION   BX284606-3262
PROTEIN_ID  CAD57691.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="nlg-1"
                     /locus_tag="CELE_C40C9.5"
                     /standard_name="C40C9.5b"
                     /note="Confirmed by transcript evidence"
                     /db_xref="WormBase:WBGene00006412"
     intron_pos      16:2 (1/14)
     intron_pos      61:0 (2/14)
     intron_pos      98:2 (3/14)
     intron_pos      187:1 (4/14)
     intron_pos      231:1 (5/14)
     intron_pos      288:0 (6/14)
     intron_pos      340:0 (7/14)
     intron_pos      424:0 (8/14)
     intron_pos      466:2 (9/14)
     intron_pos      575:1 (10/14)
     intron_pos      662:1 (11/14)
     intron_pos      710:0 (12/14)
     intron_pos      745:0 (13/14)
     intron_pos      781:2 (14/14)
BEGIN
        1 MERIYLLLLL FLPRIRSYDV RSVTTSWGMV RGEVVSPEGD DLPPVAQYLG IPYGVAPTGQ
       61 YRFNMAISAA KWTHMPKDAR KVSPVCIQTD MPELSETKAF KHTSAQRFDF NHRLLPHLKK
      121 QSEDCLYMNI YVPERLEISR DNYLPVMVIV HGEEYGWGTG NAFNGTTLAA YGHIIVVTLN
      181 YRLGVFGFLG RCESSSCSGN SGISDLVSAL TMLNVILPSF GGDSKSVTLA GWGSGASLVS
      241 LLMASPLTQP GRRLFRRAIL LDGSALSPWA ISQNPQQYFM QLAEELACAP KNRTSSFNDN
      301 VDTIVRCMQV HSSENITKAV LKIDVPTFLS GFAPIVDGQL IPNKPQVSFS TQYGSLFREI
      361 DLLVGISSNP SHHMISNEDL KVGISKEKRM RIFRSLVRNL YDFHREEILA SIINEYTDWE
      421 NPRDHPKSIR NGVLNALSDV LYTAPLIETL RSHSADEVRK EANTFMFAFA HETRSWSQEQ
      481 PNSGIRGSLS GDIVPYIFGY PLAQGDSEER LYSGFNTDDK GISKVMMHYV SNFVKSGDPS
      541 KPNPMSKNFP MGDVFHSTAW PQFDQPNREA YLEITDRPRV KNYYRNAQVG FWNNFIPQLH
      601 KNGKETEPVG EEHHLLSDHF RKDSYFGKTR HFSSYANLPF PPPPMPPSPP PELTTKPKPS
      661 ESPTTLQTTT ESEKAAAGSF TGKALGGVIF IGCGFLIMNV CLLIAVRREW GKKRRNEKKF
      721 QLQYQTYNSN HGGGAEQYNS LNSPEPLLSA SHKNSTSMRP AGISPTCPRH GRAALALQNS
      781 RLTAAQAPTL EEIQV
//