LOCUS CAA92000.4 1137 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Ground-like domain-containing protein protein. ACCESSION BX284606-2651 PROTEIN_ID CAA92000.4 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="grd-1" /locus_tag="CELE_R08B4.1" /standard_name="R08B4.1" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00001690" /db_xref="EnsemblGenomes-Tr:R08B4.1a.1" /db_xref="EnsemblGenomes-Tr:R08B4.1a.2" /db_xref="GOA:Q21835" /db_xref="InterPro:IPR001767" /db_xref="InterPro:IPR003586" /db_xref="InterPro:IPR003587" /db_xref="InterPro:IPR006141" /db_xref="InterPro:IPR007284" /db_xref="InterPro:IPR036844" /db_xref="UniProtKB/TrEMBL:Q21835" /db_xref="WormBase:WBGene00001690" intron_pos 47:1 (1/14) intron_pos 87:0 (2/14) intron_pos 139:0 (3/14) intron_pos 206:1 (4/14) intron_pos 288:1 (5/14) intron_pos 324:0 (6/14) intron_pos 649:0 (7/14) intron_pos 774:0 (8/14) intron_pos 788:1 (9/14) intron_pos 872:0 (10/14) intron_pos 965:0 (11/14) intron_pos 1010:1 (12/14) intron_pos 1096:0 (13/14) intron_pos 1116:0 (14/14) BEGIN 1 MNLLIFLLCY FLGSPHYSEA NKIKLKSSGR SADINHDSPC IWNKTQSWVH PYQSITVECC 61 DEELSKLIHK TILDAGNNAK LGNLAKFIQR RSQLFYHMSF ETIVSRENFA ISTHYHGTHS 121 CRVHDNNLYY LVYETPVQYD PFNMKTEDYL ASIDSADPLG STKPANLRGD FPDVREDSTA 181 GEDLSVQPSI GNILQYPNKF AWPDPDEEVS KKIMLAEQDA IRSINELMES VTEISVMNSG 241 AVVNSTDSLN ITEIELPNPT PIPRNFANLR EKDRLPENTH CDKERKDGNR CCDGRLASTM 301 RDAMRQMATS PDFGQGKEGI IAAELQQKVQ QRFQKSYEII VSQSDFVIST YTAGDNFCKF 361 DNKGFYILAY VSPKQYDIDE KEDEMKLAAT SNKDPLGANT TMFENEAPWH VALKLDTYGD 421 RAGYPVGSHC TQARTGSKCC SLILFNAMKS GYDSHVATSN FDPYDIRNIS KAVQWSVEEI 481 LQHSAEVIVS LDDFAYATYN NNSYTCKYRV DKYHILAYTT PNHDLDNYDE MATSIIDSEP 541 EAQIVYPAVD RTANQIPFQN TPSPYWTTPV PIPTQVYMPM QYTQQPMQPM YNQQPFFNQQ 601 PMFNQQPMYL QPAFNQAPLP YQYPAQPSQF NPFLASFRRF KRQIGRTPYP IHQNVYNDIG 661 SAKPFNCPAD LSGLSGMACC DGGLQFEANK VIDQAKQEPD FDKHNTRNLA KLMTRAVQKR 721 FGTTFESVVA EADFSWGTNK FNGRTCKIDS QGYNALTYQS SSKPPPPSDF IDIPNDPTLG 781 GPTGSSGGGG GGSNSNSGGG GGNGGGGNGG GGNGNGGGAG DGNGGAGAGN GNGAGAGNGN 841 GAGAGNGNGA GAGNGNGAGA GNGNGAGAGD ASAAAAAAQA QAAAAAQAQA AAAAAAQQAA 901 AAAAAANAQQ AAAAAAAAAN PLSALVAATG ACFSLDTWVT TPTGKKRMDQ IDIGDYVLTA 961 DLEKTYFTPI TLWIHREPEK VQEFLTIMTE YGKTLRITSR HFMYRNKCGK SYPQYIKMLP 1021 HDGEAIFASD LEVGDCVVVL YKGKYRQQKI ETITRSVRTG IYSPLTNNGR IIVNDMLASC 1081 YSEIQQNTLQ TTFFWAYDKL RSVLVEFFGD LYNNKIELPT GTTLSRDIIS LIVPIQK //