LOCUS       BAD82631.1               238 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group putative 60S ribosomal protein
            L10A protein.
ACCESSION   AP003794-17
PROTEIN_ID  BAD82631.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 150381)
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUN-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2  
  AUTHORS   Sasaki,T., Matsumoto,T., Yamamoto,K., Sakata,K., Baba,T.,
            Katayose,Y., Wu,J., Niimura,Y., Cheng,Z., Nagamura,Y.,
            Antonio,B.A., Kanamori,H., Hosokawa,S., Masukawa,M., Arikawa,K.,
            Chiden,Y., Hayashi,M., Okamoto,M., Ando,T., Aoki,H., Arita,K.,
            Hamada,M., Harada,C., Hijishita,S., Honda,M., Ichikawa,Y.,
            Idonuma,A., Iijima,M., Ikeda,M., Ikeno,M., Itoh,S., Itoh,T.,
            Itoh,Y., Itoh,Y., Iwabuchi,A., Kamiya,K., Karasawa,W.,
            Katagiri,S., Kikuta,A., Kobayashi,N., Kono,I., Machita,K.,
            Maehara,T., Mizuno,H., Mizubayashi,T., Mukai,Y., Nagasaki,H.,
            Nakashima,M., Nakama,Y., Nakamichi,Y., Nakamura,M., Namiki,N.,
            Negishi,M., Ohta,I., Ono,N., Saji,S., Sakai,K., Shibata,M.,
            Shimokawa,T., Shomura,A., Song,J., Takazaki,Y., Terasawa,K.,
            Tsuji,K., Waki,K., Yamagata,H., Yamane,H., Yoshiki,S.,
            Yoshihara,R., Yukawa,K., Zhong,H., Iwama,H., Endo,T., Ito,H.,
            Hahn,J.H., Kim,H.I., Eun,M.Y., Yano,M., Jiang,J. and Gojobori,T.
  TITLE     The genome sequence and structure of rice chromosome 1
  JOURNAL   Nature 420, 312-316 (2002)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from SP6 to T7 of the PAC
            clone. This sequence of P0489B03 clone has an overlap with
            P0683F02 (DDBJ: AP003289) clone at 5' end and an overlap with
            P0679C12 (DDBJ: AP003287) clone at 3' end. Detailed information on
            overlap and assembly quality together with annotation of this
            entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="1"
                     /clone="P0489B03"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="P0489B03.28"
                     /note="contains EST(s): AU095007(E50125),AU058194(E50125)"
     intron_pos      2:2 (1/5)
     intron_pos      76:0 (2/5)
     intron_pos      132:2 (3/5)
     intron_pos      153:1 (4/5)
     intron_pos      222:0 (5/5)
BEGIN
        1 MSKLQSDALR EAISQITSES REKQRKFVET IELQIGLKNY DPQKDKRFSG SVKLPHIPRP
       61 KMKVCMLGDA QHVEEAEKMG LDYMDVEALK KMNKNKKLVK KLAKKYHAFL ASEAIIKQIP
      121 RLLGPGLNKA GKILLVYGRS ILKSSYIIVS KRGKFPTLVT HQESLESKVN ETKATVKFQL
      181 KKVLCMGVAV GNCAMEEKQI FQNVQMSVNF LVSLLKKNWQ NVRCLYLKST MGKVIRVF
//