LOCUS BAD46593.1 487 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group putative nuclear antigen 21D7 protein. ACCESSION AP006149-32 PROTEIN_ID BAD46593.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 171257) AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y. TITLE Direct Submission JOURNAL Submitted (26-DEC-2002) to the DDBJ/EMBL/GenBank databases. Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y. TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 9, BAC clone:B1274F11 JOURNAL Published Only in Database(2002) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from -21M13 to M13rev of the BAC clone. This sequence of B1274F11 has an overlap with P0229B10(DDBJ: AP006174) clone at 5' end and with P0478E02(DDBJ: AB109206) clone at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="9" /clone="B1274F11" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="B1274F11.40" /note="contains EST(s): D40574(S2645)" /note="contains full-length cDNA(s): AK100985,AK101536,AK059017" intron_pos 27:1 (1/7) intron_pos 91:0 (2/7) intron_pos 137:0 (3/7) intron_pos 182:2 (4/7) intron_pos 201:0 (5/7) intron_pos 238:0 (6/7) intron_pos 318:0 (7/7) BEGIN 1 MPEDVEMNDS QPQPAAAPPP AASTLQHLKE IASVIEAGSL TKEVRRISRA VRLTVALRRR 61 LAARDVAAFL AFALPHSSEA FARLSSLLPK EDGSEMDVDL AAPAAQVSIK HGLPEIEIYC 121 YLLVLIFLID NKKYDEAKAC ASASITRLKN LNRRTVDVLA SRVFTYYSYV HELTSSLAEI 181 RGTLLALHRM ATLHRDELGQ ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR 241 YLFYLGKIRT IQLEYTDAKE SLLQAARKAP TTARGFRVQC NKWAIIVRLL LGEIPERTVF 301 MQKGMKAALA PYFELTNAVR VGDLELFRAV AEKFASTFSA DRTRNLIVRL RHNVIRTGLR 361 NISISYSRIS LADIAKKLRL DSENPVADAE SIVAKAIRDG AIDATIDHAN GWMVSKETGD 421 VYSTNEPQIA FNSRIAFCLN MHNEAVKALR FPPNSHKEKE SAEKRRERLQ QEEELAKHMA 481 EEDDDDF //