LOCUS       BAC83916.1               534 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group methylmalonate semi-aldehyde
            dehydrogenase protein.
ACCESSION   AP005179-16
PROTEIN_ID  BAC83916.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 127992)
  AUTHORS   Sasaki,T., Matsumoto,T. and Katayose,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAY-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2  
  AUTHORS   Sasaki,T., Matsumoto,T. and Katayose,Y.
  TITLE     Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, BAC
            clone:OSJNBb0084L07
  JOURNAL   Published Only in Database(2002)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from M13rev to -21M13 of the
            BAC clone. This sequence of OSJNBb0084L07 clone has an overlap
            with P0506C07 (DDBJ: AP004384) clone at 5' end and with
            OSJNBb0002L09 (DDBJ: AP005877) at 3' end.  Detailed information on
            overlap and assembly quality together with annotation of this
            entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="7"
                     /clone="OSJNBb0084L07"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="OSJNBb0084L07.21"
                     /note="contains EST(s):
                     AU070251(S20304),C72889(E2423),AU032148(R3630),AU032149
                     (R3630),AU165534(E2423)"
                     /note="contains full-length cDNA(s): AK065917"
     intron_pos      10:1 (1/18)
     intron_pos      39:0 (2/18)
     intron_pos      64:0 (3/18)
     intron_pos      118:0 (4/18)
     intron_pos      144:1 (5/18)
     intron_pos      196:0 (6/18)
     intron_pos      217:1 (7/18)
     intron_pos      244:0 (8/18)
     intron_pos      266:0 (9/18)
     intron_pos      283:0 (10/18)
     intron_pos      333:2 (11/18)
     intron_pos      364:0 (12/18)
     intron_pos      391:0 (13/18)
     intron_pos      417:0 (14/18)
     intron_pos      429:0 (15/18)
     intron_pos      443:2 (16/18)
     intron_pos      470:0 (17/18)
     intron_pos      500:1 (18/18)
BEGIN
        1 MLRAALLRSG SGLRRPPMAA PLSTAAAASW LSDSASSPPR VRLLIGGEFV ESRADEHVDV
       61 TNPATQEVVS RIPLTTADEF RAAVDAARTA FPGWRNTPVT TRQRIMLKYQ ELIRANMDKL
      121 AENITTEQGK TLKDAWGDVF RGLEVVEHAC GMGTLQMGEY VSNVSNGIDT FSIREPLGVC
      181 AGICPFNFPA MIPLWMFPIA VTCGNTFVLK PSEKDPGAAM MLAELAMEAG LPKGVLNIVH
      241 GTHDVVNNIC DDEDIKAVSF VGSNIAGMHI YSRASAKGKR VQSNMGAKNH AIILPDADRD
      301 ATLNALIAAG FGAAGQRCMA LSTAVFVGGS EPWEDELVKR ASSLVVNSGM ASDADLGPVI
      361 SKQAKERICK LIQSGADNGA RVLLDGRDIV VPNFENGNFV GPTLLADVKS EMECYKEEIF
      421 GPVLLLMKAE SLDDAIQIVN RNKYGNGASI FTTSGVSARK FQTDIEAGQV GINVPIPVPL
      481 PFFSFTGSKA SFAGDLNFYG KAGVQFFTQI KTVTQQWKES PAQRVSLSMP TSQK
//