LOCUS BAC79863.1 462 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group senescence-associated putative protein-like protein. ACCESSION AP004308-2 PROTEIN_ID BAC79863.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 134659) AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Direct Submission JOURNAL Submitted (31-OCT-2001) to the DDBJ/EMBL/GenBank databases. Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, PAC clone:P0552F09 JOURNAL Published Only in Database(2001) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from SP6 to T7 of the PAC clone. This sequence of P0552F09 clone has an overlap with B1056G08 (DDBJ: AP004988) at 5' end and with P0560B08 (DDBJ: AP004309) at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="7" /clone="P0552F09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="P0552F09.102" /note="contains EST(s): AU062478(C11349),AU092192(C11349),AU076219(R10022)" /note="contains full-length cDNA(s): AK071047" intron_pos 270:0 (1/3) intron_pos 337:0 (2/3) intron_pos 402:1 (3/3) BEGIN 1 MGAPNEVTSY SSLSKIDSNN QGGHLSSLVP ANIYPAQDYL YEPSLEPDFP SEYDSREDPF 61 VPTRASSNIN LKTVLTGLAA IVSGTNKNQD NTLQQQSFST DVSFLGFDKD GDVNVHPSVC 121 VPSAPPLLET NALQYSAYRE VLQADPPEWL PDSSTSVCLQ CSLPFTALTR GRHHCRFCGG 181 IFCKDCSKGR CLMPMKFRQR DPQRVCDACY DRLDPLQGIL INYNSNAMQP AKHDVMDWTS 241 TRSWLNLPVG LSMEYEIYKA TNTLNRYCQV ARLNPEKSIP SSILKGAKGL AVITVAKAGA 301 VLTYKVGTGL VVARRSDGSW SAPSAIASVG LGWGVQFGGE LTDFIIVLHD RKAVKAFSSR 361 MHLSLGAGLS AAAGPIGRAF EADVRASEKG SGLCYTYSCS KGAFVGVSLE GNVVTTRSET 421 NLRFYGDAYL TTTDILFGKV EKPRAAQPLY SALDDLFSKM VY //