LOCUS       BAC21500.1                59 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group hypothetical protein protein.
ACCESSION   AP004988-18
PROTEIN_ID  BAC21500.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 168173)
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2  
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, BAC
            clone:B1056G08
  JOURNAL   Published Only in Database(2002)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from M13rev to -21M13 of the
            BAC clone. This sequence of B1056G08 clone has an overlap with 
            P0616D06(DDBJ: AP005198) at 5' end and an overlap with P0552F09
            clone(DDBJ: AP004308) at 3' end and an overlap with P0560B08
            clone(DDBJ: AP004309) at 3' end.  Detailed information on overlap
            and assembly quality together with annotation of this entry is
            available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="7"
                     /clone="B1056G08"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="B1056G08.134"
                     /note="predicted by GlimmerM etc."
BEGIN
        1 MRACAVRNGV VVAEPDVQIT RSHYSLNLDA AAALITVKLL LACTGSTIVD RLAACCWKF
//