LOCUS       AWM35148.1              1002 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis SusC/RagA family TonB-linked outer
            membrane protein protein.
ACCESSION   CP029145-4285
PROTEIN_ID  AWM35148.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /locus_tag="DDQ68_21695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008510143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MANQYSLTRA VKTLGRCWPS IFLLVLCLGA PALAWAQQTV KGTVTDEKNA ALPGVTVRIK
       61 DGTAAVASNP NGTYSIQTSG PADILVFSFV GTVTKEIAPG TQTSLNVTLL PDAQKLNDVV
      121 VIGYGTASRA DITGAVTSIK SEEFNQGVLT TPAELLQGKV AGLNITKSGD PNQRPSVVLR
      181 GPSTIRTVNG GVTEPFYVID GVPGASIDLL APDDIATIDV LKDASSTAIY GTRAANGVII
      241 ITTKRAKPGQ SRLTYSAYGA VANVSKKIDM LSGDELRQYL VDNKTKPLAT PADDDGSNTN
      301 WQDLIERTSY STNHNLSFTG SANATDYGAS VNYLKNNGTL INTSLERLIY RGFINQRFFN
      361 NRLKLGVNII NSSTTQNDIP QSSTLPGMLF YLPTVSPFNA NGTYKENYTR TGSGPLNPLS
      421 LANNNAYVTK DNKTLVNGLV QVDVLTGLKV TLSASTQRAQ TNYSSYLNSQ SGLAVNLGGV
      481 ARRAEYENTN DVLEAYANYD KTLGLHSFQL LGGYSYQQDR TNDGFGITTQ NFANNALGSN
      541 NLYLSNPSSL AQIAFDNNPI STLRLESQYA RVQYQYADRY LAQVSLRRDG SSVFGVNNRY
      601 GYFPTAALGW RLINEEFMRG LPVFSDLKLR AGYGVSGNSQ GFDAFSAILI YGTPPGSSKY
      661 LNNGAISNVV NAVRNENPNL KWESTATTNI GLDFGLFKNR LTGSVDYYIK KTSDLIDDVL
      721 PVSSTEFQYT TYTANVGRMT NRGIEVALSV VPVQTATFTW RSSLNFSHNY NNIDNLSTDR
      781 FTIPYIQTAQ LGGKGQSGNY SQIVQPGSPL GTFKLWHYLG KNDLGVSTYQ KADGSVTATQ
      841 PLTTDMQVAG SAQPSLIYGW SNTFTCKGFD LNFLVRGVMG NKILNATLAG LNNPADARLQ
      901 NIPRFTLGEA FTDINAYLIS DRFLESGAYL RLDNATLGYT LRPHTQYVQA LRLYVATNNL
      961 FIITKYRGID PEINIGGLTP GIDNQNFYPK TRTFTLGLSA SF
//