LOCUS       AWM34715.1               662 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis NADH-quinone oxidoreductase subunit L protein.
ACCESSION   CP029145-3793
PROTEIN_ID  AWM34715.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /locus_tag="DDQ68_19205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019947410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 METVIPGPNA PYTTLLYVLI PLLPFLGFLL NGLLNKRLPA TVAGLIGSVT VLGSFLISAF
       61 LFWSFLHPAA GWALPGTTVH RAYTVELFDW ISVASLQIPF GYQIDQLSLI MLLLVTGVGF
      121 LIHVYSISYM AHDENVGKFF SFLNLFIFSM LVLVLGSNFV ILFIGWEGVG LCSYLLIGFW
      181 NTNTSYNNAA KKAFIINRIG DLGFLLGIFL IYLAFNSVQY GEVFQKASLM EFGPYTVGIC
      241 TAITLLLFVG AMGKSAQLPL YTWLPDAMAG PTPVSALIHA ATMVTAGIYM VLRANVLFTL
      301 APQTLEVVGI IGLATAFFAA TIGLAQNDIK KVLAYSTVSQ LGYMFLALGV MGYSSSLFHV
      361 LTHAFFKALL FLGAGSVIHA MSNEQDLRRM GGLRKALPIT FFTFLIGCLA ISGIPPFSGF
      421 FSKDEILSHV YEHNKLMWAV GLFTSFLTAF YMFRLLFLAF FGEFRGTDEQ KHHLHESPAS
      481 MTLPLIVLAI LAAVGGFMGA PMLVGKHYLA DFLAPIFTYS RRLNPAAFAL EPDHGTELML
      541 IGLSVAAGVL GIVLAYVLYV ARAERPVADD APRSAPENLV YHKYYIDELY DALFVKPTMA
      601 LSRGLYKFVE NGVINPITNG FGRAVQGSGY LLRYVQTGAV ETYLILMVIG IVLILGLNYG
      661 RM
//