LOCUS       AWM34180.1               489 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis glutamate synthase protein.
ACCESSION   CP029145-3190
PROTEIN_ID  AWM34180.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /gene="gltD"
                     /locus_tag="DDQ68_16140"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013666447.1"
                     /note="glutamate synthase is composed of subunits alpha
                     and beta; beta subunit is a flavin adenine
                     dinucleotide-NADPH dependent oxidoreductase; provides
                     electrons to the alpha subunit, which binds L-glutamine
                     and 2-oxoglutarate and forms L-glutamate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MGNITGFKQY PRELPAKEAP QVRTTNYQEF IGLYPPEALH QQAARCMNCG IPFCHSGCPL
       61 GNIIPEFNEA VYRQDWADAY QILTTTNNFP EFTGRICPAP CESACVLSIH STPVAIEEIE
      121 KHIIEIAFEK GYVQPTAPVL KTGKTVAVVG SGPAGLAVAA QLAKAGHAVT VFERDERPGG
      181 LLRYGVPDFK LEKWVIDRRI ELMEKDGIVF RCNTEIGRDL PAAELQRTFD AVVLAGGAIA
      241 PRDLPLPGRA LAGIHYAMDY LGQQNRRVSS LPVQGPDILA TDKHVVVIGS GDTGSDCVGT
      301 ANRQQATAVA QFALMNQPSN ERPAHTPWPH YPTVFRTSSS HEEGCQRHWG ISTQAFLGDE
      361 HGHVRALQVS DVTWETDAMG RRLTSEEVPN STREIPCELV LLAMGFHANP YEGVLAQLGV
      421 TVEKNGLVQA PETTYQTNVP GVFVAGDMRR GQSLVVWAIS EGREAARQID LFLTGQTALP
      481 SKNAVGMFA
//