LOCUS       AWM34067.1               579 aa    PRT              BCT 23-MAY-2018
DEFINITION  Hymenobacter nivis single-stranded-DNA-specific exonuclease
            RecJ protein.
ACCESSION   CP029145-3062
PROTEIN_ID  AWM34067.1
SOURCE      Hymenobacter nivis
  ORGANISM  Hymenobacter nivis
            Bacteria; Bacteroidota; Cytophagia; Cytophagales;
            Hymenobacteraceae; Hymenobacter.
REFERENCE   1  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Complete genome of Antarctic heterotrophic bacterium Hymenobacter
            nivis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027597)
  AUTHORS   Terashima,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2018) Institute of Low Temperature Science,
            Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, Hokkaido
            060-0819, Japan
COMMENT     Bacteria and source DNA available from DSM 101755.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Analysis v2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2018 12:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,451
            CDS (total)                       :: 4,396
            Genes (coding)                    :: 4,252
            CDS (coding)                      :: 4,252
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 51 of 144
            Pseudo Genes (incomplete)         :: 71 of 144
            Pseudo Genes (internal stop)      :: 48 of 144
            Pseudo Genes (multiple problems)  :: 24 of 144
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Hymenobacter nivis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 111535"
                     /isolation_source="Red snow"
                     /culture_collection="DSM:101755"
                     /culture_collection="NBRC:111535"
                     /type_material="type strain of Hymenobacter nivis"
                     /db_xref="taxon:1850093"
                     /country="Antarctica: Yatude Valley"
                     /collection_date="2006"
     protein         /gene="recJ"
                     /locus_tag="DDQ68_15500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009195337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MPPPAAKSWN FAPAPDPALV LAITEALPVG PEVGALLVQR GLDTPEAAAA FIYSDLRQLP
       61 DPFLLRDMDL AVDRLVRALE TGEKVLVLGD YDVDGITSVA LVISYLTPLF GAERLRDYIP
      121 DRYTEGYGIS HTAVDVAAAE GFGLIVALDC GIKALEPVAY AAAKGVDFII CDHHLPGDEL
      181 PAAVAVLDPK RKDCCYPYKD LSGCGVGFKL MQGLGQRLGR DTAFLYDLLD LVTVSIAADV
      241 VPVTGENRVL AAHGLRCFNE DAHLLRPGLA ALRELATLRE GPLTLSSLVF GFAPRINAAG
      301 RMGDARRAVA MLLAADQQEA RHTTEVVDRM NQERRGSDQA TTQEALALIA ASPTLQTSHA
      361 TVLYQAHWHQ GVLGIVASRC LDQYYRPTVI LTQRDGKATG SARSVAGFDI HAALEACAPL
      421 LEQYGGHRAA AGLTLKVENV PAFQAQFEEV VARTQATAHL VRPVEIDALL PVARITEGFL
      481 QDLRPLEPFG PGNPNPVFAT ARVLAVPGSA REVGNGHLKI RLVAADAPGP AVEVIGFGLA
      541 GYLPQINEGH PFDVCYTLEM NEYRGSRHVQ LRLLDLRWA
//