LOCUS       ASD26393.1               481 aa    PRT              BCT 22-JUN-2017
DEFINITION  Brevundimonas diminuta succinate-semialdehyde dehydrogenase
            (NADP(+)) protein.
ACCESSION   CP021995-1082
PROTEIN_ID  ASD26393.1
SOURCE      Brevundimonas diminuta
  ORGANISM  Brevundimonas diminuta
            Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Brevundimonas.
REFERENCE   1  (bases 1 to 3385620)
  AUTHORS   Chang,H., Feng,Y., Li,Z., Xue,J. and Cheng,D.
  TITLE     Biodegradation of gentamicin by bacterial consortia AMQD4 in
            synthetic medium and raw gentamicin sewage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3385620)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2017) IARRP, CAAS, ZhongGuancun, Beijing 100081,
            China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 296.25x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/16/2017 13:13:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,288
            CDS (total)                       :: 3,227
            Genes (coding)                    :: 3,192
            CDS (coding)                      :: 3,192
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 9 of 35
            Pseudo Genes (incomplete)         :: 21 of 35
            Pseudo Genes (internal stop)      :: 8 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Brevundimonas diminuta"
                     /mol_type="genomic DNA"
                     /strain="BZC3"
                     /isolation_source="gentamicin fermentation residue"
                     /db_xref="taxon:293"
                     /country="China: Shandong"
                     /collection_date="2016"
     protein         /gene="gabD"
                     /locus_tag="CD943_05500"
                     /EC_number="1.2.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003166020.1"
                     /note="catalyzes the formation of succinate from succinate
                     semialdehyde; NADP dependent; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /transl_table=11
BEGIN
        1 MSDPARLLRR QAHVDGRWID ADGGGTIEVT NPATGEVLAT VPDMGALETR RAVAAAEAAM
       61 KPWAAKTAGE RARILRRWFD LMMSEQDALG RLLTREQGKS LTEAKGEIAY AASFIEWFAE
      121 EGKRTYGEVI PTHDASKRLV TLRQPVGVVG AITPWNFPAA MITRKVGPAL AAGCAVVLKP
      181 ASQTPLSALA LAVLAEEAGL PPGLFNVVTG SASAIGGELT SNEIVRKISF TGSTEIGRLL
      241 MKQSSDTIKK MSLELGGNAP FLVFDDADID AAVAGAVASK YRNAGQTCVC TNRFYVQAAV
      301 HDEFVAKLTQ ATQALKVGNG LDDGVQIGPL IDEKAVKKVE EHIADALAKG ASLLTGGARH
      361 ELGTTFFQPT VLSGVTQDMQ MCREETFGPV SGVVRFETEE EGIALANDTI FGLAGYFYAR
      421 DLSRVWRVAE ALETGMIGVN TGLISTEVAP FGGIKQSGLG REGSSHGIED YLEIKYLCMG
      481 L
//