LOCUS       ASD25844.1               689 aa    PRT              BCT 22-JUN-2017
DEFINITION  Brevundimonas diminuta TonB-dependent receptor protein.
ACCESSION   CP021995-474
PROTEIN_ID  ASD25844.1
SOURCE      Brevundimonas diminuta
  ORGANISM  Brevundimonas diminuta
            Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Brevundimonas.
REFERENCE   1  (bases 1 to 3385620)
  AUTHORS   Chang,H., Feng,Y., Li,Z., Xue,J. and Cheng,D.
  TITLE     Biodegradation of gentamicin by bacterial consortia AMQD4 in
            synthetic medium and raw gentamicin sewage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3385620)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2017) IARRP, CAAS, ZhongGuancun, Beijing 100081,
            China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 296.25x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/16/2017 13:13:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,288
            CDS (total)                       :: 3,227
            Genes (coding)                    :: 3,192
            CDS (coding)                      :: 3,192
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 9 of 35
            Pseudo Genes (incomplete)         :: 21 of 35
            Pseudo Genes (internal stop)      :: 8 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Brevundimonas diminuta"
                     /mol_type="genomic DNA"
                     /strain="BZC3"
                     /isolation_source="gentamicin fermentation residue"
                     /db_xref="taxon:293"
                     /country="China: Shandong"
                     /collection_date="2016"
     protein         /locus_tag="CD943_02425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003169940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSLKTAAAPC ALLIGACLAP SLAHAYDLSE ADSPTVVDSI IVTGRRNAED PTVVAEARDR
       61 LSRTPGAVAV VSAESYSDRF VQGFADTLRN VPGVLAQKRF GEESRLSIRG SGIAQGFHQR
      121 GVLFAQDGVP FADADGFSDF QSVDSLSARY VEVWKGANTL RFGGAQLGGA INLVTPTGRT
      181 ARQRALMQVE GGSNGFVRAH GAVAETYGDW DVYAAATAMQ GDGWRDHSQQ SQGRLTVNAG
      241 RSFGEDREVR LIAQAADIKQ DMPGSLTLEE ALNTPRKAAA NALSGDQARD LTVKRLTLQT
      301 RWRFNESTLF EGAVWGWEKS LYHPIFQVMD QDSATRGAFA RIDWTGQIGD LRADAFYGFS
      361 WREGEIEALR YVNLAGQRGA KTADARQDAS GLDVFAEGRL FVTDQLALVA GGSWGRATRD
      421 YLDRMTPAND ASRDYEWFSP RMGLLWEAEN GAQVFANLTR SVEPPTFGAL VQAPLTGFTP
      481 VEVQDAWTGE IGTRGRHGPL AWDLVAYRSR IEGEMLNFIT GPDIPAATFN AKKTIHQGIE
      541 AGLDWTLPVE LADGSLMLRQ VYNWSDFRFD GDARWGDNRL PVVPEHQYRA ELTWRHPTGV
      601 FVTPSVEWRM SSPYVDYANT MKAPDYAVLG LTGGFNINAR TSVYIDARNL TDKRYVGEFS
      661 AVTDARSSQT AVFFPGEGRS VFVGLRLAY
//