LOCUS       ASD25551.1               532 aa    PRT              BCT 22-JUN-2017
DEFINITION  Brevundimonas diminuta protein translocase subunit SecD protein.
ACCESSION   CP021995-146
PROTEIN_ID  ASD25551.1
SOURCE      Brevundimonas diminuta
  ORGANISM  Brevundimonas diminuta
            Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Brevundimonas.
REFERENCE   1  (bases 1 to 3385620)
  AUTHORS   Chang,H., Feng,Y., Li,Z., Xue,J. and Cheng,D.
  TITLE     Biodegradation of gentamicin by bacterial consortia AMQD4 in
            synthetic medium and raw gentamicin sewage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3385620)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2017) IARRP, CAAS, ZhongGuancun, Beijing 100081,
            China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 296.25x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/16/2017 13:13:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,288
            CDS (total)                       :: 3,227
            Genes (coding)                    :: 3,192
            CDS (coding)                      :: 3,192
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 9 of 35
            Pseudo Genes (incomplete)         :: 21 of 35
            Pseudo Genes (internal stop)      :: 8 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Brevundimonas diminuta"
                     /mol_type="genomic DNA"
                     /strain="BZC3"
                     /isolation_source="gentamicin fermentation residue"
                     /db_xref="taxon:293"
                     /country="China: Shandong"
                     /collection_date="2016"
     protein         /gene="secD"
                     /locus_tag="CD943_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008259662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MIQLSRWKIT LVALSLVLGL FLAYPSVLSP AQREALPSWL PSNGLNLGLD LQGGSYLLLE
       61 VDVPEMRTKR ISNLMEDVRV SLREDQVNIM GMQREAGGVV VTVAEGAAYD TAFNTLRTMA
      121 QQGVGPTGQP DRVATKLGGG RIRYAFTDAA LASMGATAVD QSIEVVRRRL DSSGTKEIAI
      181 TRQGADRIVI QAPGQSDPAE LERLVGRTAQ LTFQMVDTSP TGLNDALAGR VPPDAELLVD
      241 DLGTPYLVKR RILVSGENLT RAGVGADQNN RPAIDFQFDS QGSRRFGEAT AQNLGKPFAI
      301 ILDGKVISAP TIQSAITGGR GQITGNFTIA SASELVNLLN GGALPAPLKV EERRVVTAEL
      361 GADAVAAGAL STALGFAVIV IFMILAYGFL FGGISVIGLI LNGILIVAAM SLTQATLTLP
      421 GIAGLILTFA VAVDANVLIY ERMRDEARQG RSVVASMDAG FNRAMGTIID ANLTTLVAAL
      481 IMFMFGAGPV RGFAWTLTIG VFTSVFSSVL TAQVLLGYWL KIAKPKKLPI AE
//