LOCUS       ANI07645.1               475 aa    PRT              BCT 02-JUN-2016
DEFINITION  Pseudomonas aeruginosa SJTD-1 GABA permease protein.
ACCESSION   CP015877-815
PROTEIN_ID  ANI07645.1
SOURCE      Pseudomonas aeruginosa SJTD-1
  ORGANISM  Pseudomonas aeruginosa SJTD-1
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6243825)
  AUTHORS   Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
  TITLE     Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
            bacterium capable of degrading long-chain alkanes and crude oil
  JOURNAL   J. Bacteriol. 194 (17), 4783-4784 (2012)
   PUBMED   22887679
REFERENCE   2  (bases 1 to 6243825)
  AUTHORS   Liang,R., Tao,F., Liu,H. and Liu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2012) State Key Laboratory of Microbial
            Metabolism, School of Life Sciences and Biotechnology, Shanghai
            Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
            China
REFERENCE   3  (bases 1 to 6243825)
  AUTHORS   Liang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2016) State Key Laboratory of Microbial
            Metabolism, School of Life Sciences and Biotechnology, Shanghai
            Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
            China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Source bacteria available from Dr. Rubing Liang (School of Life
            Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
            200240, China).
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: ALLPATH-LG v. 2015; GapCloser v. 2015
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 200x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/25/2016 16:12:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,696
            CDS (total)                       :: 5,617
            Genes (coding)                    :: 5,603
            CDS (coding)                      :: 5,603
            Genes (RNA)                       :: 79
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 7 of 14
            Pseudo Genes (internal stop)      :: 3 of 14
            Pseudo Genes (multiple problems)  :: 1 of 14
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa SJTD-1"
                     /mol_type="genomic DNA"
                     /strain="SJTD-1"
                     /isolation_source="soil"
                     /db_xref="taxon:1193501"
                     /country="China: Shanghai"
     protein         /locus_tag="A214_04130"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003083784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSKVVLASQL PNKRNASLAP GLKQRHVTML SIAGVIGAGL FVGSGHAIAA AGPAALLAYL
       61 IAGTLVVLVM RMLGEMAVAS PDTGSFSTYA DRSIGRWAGF TIGWLYWWFW VLVIPLEAIA
      121 AAAILNAWFP AIDTWIFALA VTFLLTVTNL FSVARYGEFE FWFALLKVIA IIAFIVLGAV
      181 AIVGGLPERE VSGLSSLMAS HGGFVPNGYG AVLGALLTTM FSFMGTEIVT IAAAESKDPA
      241 KQITRATNSV IWRIGLFYLV SIFIVISIVP WNDPLLIQVG SYQRALELLD IPHAKLIVDL
      301 VVLVAVASCL NSAIYTSSRM VFSLAKRGDA PSVLKLTNTA HVPRPAVLAS TAVGFLTTIV
      361 NYFAPEKVFT FLLASSGAVA LLVYLVIAVA QLRMRKQLQA SGQPIEFRMW LYPWLTWAVI
      421 LFIVAALSIM LIMPEHRHEV FATALLTIFT VCLGLLNARR KPRLGEDYAG KTARV
//