LOCUS       ALR17754.1               344 aa    PRT              BCT 03-DEC-2015
DEFINITION  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 spermidine/
            putrescine ABC transporter substrate-binding protein protein.
ACCESSION   CP009978-484
PROTEIN_ID  ALR17754.1
SOURCE      Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
  ORGANISM  Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 1927130)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Vibrio natriegens genome v1.0
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1927130)
  AUTHORS   Lee,H. and Church,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2014) Genetics, Harvard Medical School, 77 Avenue
            Louis Pasteur, NRB 233, Boston, MA 02115, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: RS HGAP v. 3
            Assembly Name          :: Vnat1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96.48x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/24/2014 10:39:19
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.9 (rev. 452286)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 4,665
            CDS                          :: 4,459
            Pseudo Genes                 :: 42
            rRNAs                        :: 34 (5S, 16S, 23S)
            tRNAs                        :: 129
            ncRNA                        :: 1
            Frameshifted Genes           :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM
                     759"
                     /mol_type="genomic DNA"
                     /strain="ATCC 14048"
                     /isolation_source="salt marsh mud"
                     /culture_collection="ATCC:14048"
                     /type_material="type strain of Vibrio natriegens"
                     /db_xref="taxon:1219067"
                     /chromosome="2"
                     /country="USA"
                     /collection_date="27-Feb-2012"
     protein         /gene="potD"
                     /locus_tag="PN96_17445"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_017633571.1"
                     /note="can transport spermidine and putrescine but
                     affinity is higher for spermidine; forms a complex of
                     PotA2BCD; PotD is a periplasmic component that binds the
                     substrate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKLIIKGLGL SALVLSMFAH AETKTLNVYA WGGYLPEASL KAFEKQEGVT VNYSTFENNE
       61 SMYTKLKLLK GTGYDVVFAS AYFIEKMGRE GLLAKIDHEQ VPNMQDTMQG LLGQAHDPNN
      121 DYSLPYIWGV TGISYNESMV EQPVTKWADL WDEHYEQQVM LIDDIRDVFG MALKMNGHSV
      181 NSKNEAEIKQ AYESLVALKN NVLLYNSDAP QVPYVSGETS VGMQWNGNAY QGQVEMPELK
      241 FVMPAEGAVL WMDNFTIPSG SENKELAHKF INFMYQPKNQ AEIVNSLGYA SATNAGRNLL
      301 PDELKNNATI FPAEDDLEKG EFINDVGAET LAIYEKYWQN LRTQ
//