LOCUS       AFM06159.1               638 aa    PRT              BCT 31-AUG-2017
DEFINITION  Bernardetia litoralis DSM 6794 PAS domain S-box protein.
ACCESSION   CP003345-3647
PROTEIN_ID  AFM06159.1
SOURCE      Bernardetia litoralis DSM 6794
  ORGANISM  Bernardetia litoralis DSM 6794
            Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
            Bernardetia.
REFERENCE   1  (bases 1 to 4919337)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
            Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
            Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
            Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
            Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
            Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     The complete genome of Flexibacter litoralis DSM 6794
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4919337)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
            Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
            Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
            Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
            Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
            Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
            Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 4089456
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
                      David Bruce (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Finishing done by JGI-LANL
            Annotation by JGI-ORNL and JGI-PGF
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Flexibacter litoralis DSM 6794
            collection_date     :: Missing
            lat_lon             :: 32.840 -117.258
            depth               :: Missing
            alt_elev            :: Missing
            country             :: USA
            environment         :: Marine
            num_replicons       :: 1
            ref_biomaterial     :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
            biotic_relationship :: Free living
            trophic_level       :: Missing
            rel_to_oxygen       :: Aerobe
            isol_growth_condt   :: Missing
            sequencing_meth     :: WGS
            assembly            :: Newbler v. 2.3 (pre-release)
            finishing_strategy  :: Finished
            GOLD Stamp ID       :: Gi04020
            Type Strain         :: Yes
            Funding Program     :: DOE-GEBA 2009
            Gene Calling Method :: Prodigal, GenePRIMP
            Isolation Site      :: Sea water aquarium outflow, La Jolla,
                                   California, U.S.A.
            Temperature Range   :: Mesophile
            Gram Staining       :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Finished
            Assembly Method          :: Newbler v. 2.3
            Genome Coverage          :: 30x
            Sequencing Technology    :: 454/Illumina
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /organism="Bernardetia litoralis DSM 6794"
                     /mol_type="genomic DNA"
                     /strain="DSM 6794"
                     /isolation_source="sea water aquarium outflow"
                     /culture_collection="DSM:6794"
                     /type_material="type strain of Bernardetia litoralis"
                     /db_xref="taxon:880071"
                     /country="USA: La Jolla, CA"
                     /lat_lon="32.840 N 117.258 W"
     protein         /locus_tag="Fleli_3854"
                     /note="PFAM: GAF domain; PAS fold; TIGRFAM: PAS domain
                     S-box"
                     /transl_table=11
                     /db_xref="InterPro:IPR000014"
                     /db_xref="InterPro:IPR003018"
                     /db_xref="InterPro:IPR013767"
BEGIN
        1 MQKRFSLNTL TGTLQFSYIL VTIMLGLTLL LVVWRGNSLF QEHEDLYKTR SMKYHASELR
       61 NSLNHSFMLL QLYAQYDTIP HAEEIYYKTA IYIFDEALVN FNTVQTLSKG EKEAVLEIKP
      121 IINQLNTKYN HLKKFSEKGD PLRNYLRIDM TGLVIRLNTS IDKFIIDEKN TEIEVRETLN
      181 SKIIKNNYFA IPLFIIIILI TYFLGQRALR KVLEGLKLMY NYTESLSQGK IPDSVTILPN
      241 EFGKTLVCIR QLSQGLEEVK DFAQEVGKRN FEKNIDSFPI DSQFGEALHQ MKISLEEVAK
      301 TEQERNWQNQ GVVEMGEVIR KHTEDMQVLC DELLSNLVKY IEAQQGAIFL PSHQEKTLIL
      361 RSSYAYGRKK IVEKEVRSDE GILGEVFQDA ERVFLTDIPN NYTQISAGLG NAKPNCVLVV
      421 PLAAQEKVLG VLEIASFKVL TEVEIRLVER TAEILAASIS SVANAEKMKN LLEKSNYSAQ
      481 QMSAQEEELR QNTEELMATR EELERQLIEI QGKVDEKDHI FENSNQAFAF VDASGRFLGL
      541 NYSFTQLLEF SREELLGNPI SKFIPDLRGL NKHAKRDSEK VMYHVYKATT RGKKEISVLA
      601 NITRLEVNKE IMFMIGMANI PSENELRQDK KVKENNLN
//