LOCUS AFM05887.1 1259 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 Eco57I restriction endonuclease protein. ACCESSION CP003345-3375 PROTEIN_ID AFM05887.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3569" /note="PFAM: Eco57I restriction endonuclease" /transl_table=11 /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR002296" /db_xref="InterPro:IPR011639" BEGIN 1 MKLQTLKPAQ SLNQAYRKEH VEAKEFERFA DALEKLLEEM EKQRENNTQF LMADFLKDAY 61 YKNLHAINPS ADSDIDTVIH HQDTQKSPVG VMIENKKPNS NEFITKDDFN KKSFHQLIYY 121 YLIERIEEKN IEIKNLVITD VYEWFIFDEN QFNKLFHQNK SLVKKFNTFI KEKGKGKGTS 181 YFYKEIAKPF IDSLDEEIIC THFDLRDYQK ELESFRQNFG KEEQSEQAQK DQKKLIHLYK 241 ILSPVHLLKK PFSNDSNSLN KDFYNELLHI LGLEEVKEQN KKVIKRKNVN NRERGSFLEN 301 TLAKVERKRV ETVRNHKSYG DSDTEKYENI ALELCITWTN RILFLKLLEA QLLQYHKTEK 361 KEVRQKYKFL NIQTIQDFNM LDELFFDVLA KRPKTRREHL NNFAHIPYLN SSLFEETPLE 421 ADTVLVNNLA DNAELTLHSK TVLKDDNGKR REGKETPLSY FFQFLDAYNF SSEGTEEIRK 481 DKKTLINASV LGLIFEKING YKDGSFYTPS FITMYMCRQT LRRSVIQKFS EEYKMEFENF 541 EDLSFFLSSK YKPEDNLKNN KIFDSIKICD PAVGSGHFLV SALNELIVIK SELGILADST 601 GKSLRVDMRI ENDELFAFET ENDFFEYQIG NKISQTIQKT LFHEKQKLIE NCLFGVDINP 661 NSVKICRLRL WIELLKNAYY TEESNFEELE TLPNIDINIK TGNSLISRFD LDADISKALK 721 KSNWTIDSYR MAVHTYRNAT SKDQKFEMEK LIDTIKADFR SEVSKKDPKI LALSKKAAEL 781 QTLLTQTSVF ELSKTEQKAK DKNIEKLKKE VLKLNTEIED IKSSKIYQNA FEWRFEFPEV 841 LDNKGNFIGF DVVIGNPPYI RQEEILSQKP HLQDNYKTYN GKADLLVFFI ELGMNIMRDK 901 GNFTFIIANK FMRAGFGEPL RIWLQQFQLN EIIDFGDLPV FEEATTYPCI ISVHKEKPNN 961 FFKAANVEDL DFDLLETRLK ETAFESDQKK LEDTGWNLAN EKTQSLLLKI KNQGQSLGVH 1021 LNGKMYYGIK TGLNEAFIID EETKNTLIKK HKKSLEIIKP FLSGRDIKKY QFPLVREYLI 1081 FAYKGIDIKK YPAIFNHLEK HEVKLKRKAG GNKWYELQSS PANTNRYEQE KIVWAETSLN 1141 NQFCIIDKGV FLNKTTFLIP SNDLVLLGIM NSNLVRFYLD SVVSKVRGGY FSMSKAYVET 1201 TPIVYPEDKT QIKEKVTQIL SLKKSNPSAD TSALESEIDA LVYVLYGLSE EEVAIIKEQ //