LOCUS AFM05815.1 1131 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein. ACCESSION CP003345-3303 PROTEIN_ID AFM05815.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3495" /transl_table=11 /db_xref="InterPro:IPR008893" /db_xref="InterPro:IPR016024" BEGIN 1 MKLIEQSKLF FKKGNSDKVY EIDLCEVGDD LYVVNFRYGK RGAKLKEGTK TASSVGRTKA 61 QAVFTALETE KTKKGYKKEK GSEPKKEKVF PTSIASKEEA ILQRLKEALN KVNHPKEEQK 121 SVFQSKWKTG RIAWKVGKLR LKSAIPFLIE LLQKNTTLEQ VEIYSILYAL VRCKDENGFL 181 ILSNYTDEKY PDYVQKIAKE GLLSSEKEKG KVAKNLIESL PPVFQELVES QNGKGLEKEI 241 TLRIGEKYKD FQFIETLYLL VHVQPFLQKV ILQAFSKIPL RPPFFKYIRS IYKLAEVRDD 301 ARLLGLLSYR FEKTMGMYKS TSISENEDTS HWRYSYKVRR YIFEISEQVS DITKEVKKKD 361 SKIGFSEQTR EYFQRRDLRR LKDFALDTEN DSYVKLATSI LLGYQQKDYQ AHSMSSLGYA 421 SWNRTTRKYT HNFTVFPDNA SSLLLNLILN GNNKELELVS NKWRKKEKIT IISDSWYAEP 481 AAQEGNLSPL ERVKLFNQKT LAEQKEENKI ENRNEFFPQK WDALPQAYVQ LLAEAKLDSI 541 HEFAYKNFKT HSEYENLVQK FDTKLLKKLL SSSSEIPAFF GVEICKDKLH ETFDKELTLI 601 LLNSRVEEGR KLAQEIIQKN SEEFTKDTNF TLFVSELIFN QYPDIRNWVN EFLQNIQLSN 661 EKWQIIVAKG ISEMLSTDKN YSALLLKDAQ NVLKTNAKTV LENLGWNIVL ELLENKNLQN 721 QVFASDILLI KSKLIKATDI PFSILSEFFE SKSEEIRSNG MEIFANYPES ALLEAHQLLG 781 NMLVSPYQNL RVSAGNIVTK LVQNKVNQES KEGKEFAEAI VTGLILALRK KDPEEIKREE 841 AAKNNNAQEE TQNELSVHAE IADLLINYFD AYLSKITLKT TLNLLHGNYR EGQFVGFHIL 901 KNHIASSNNK DGKEEISIRQ IVALAAHELL EIRSWTLEYY QNNVPRIRYE RDEALQILDA 961 KWEDVRLKAM EFFRENFTEK EWDVDSLVSI ADSVRPDIEA FGKELITKFF EEKDGEKYLI 1021 MLSQHPSNSM QLFATNYLER FATGNLQHLK EMEFYFRCVL MQVNKGRIAK TRVLEFLEKE 1081 ALSSKETAFW VVPLFNDLVA TSAVQDKERF IQILQKLKTK YDNLKVALVF E //