LOCUS AFM05601.1 873 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 ribosomal protein L7/L12 protein. ACCESSION CP003345-3089 PROTEIN_ID AFM05601.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3271" /note="PFAM: Ribosomal protein L7/L12 C-terminal domain" /transl_table=11 /db_xref="InterPro:IPR013823" /db_xref="InterPro:IPR014719" BEGIN 1 MEEEKLKYYF NNYEHYFWQW EENGEVATIP NGQTIAYREY LIEILEALAP QGLPSFGGIL 61 LALIATNPSF SENDIFLIAN SLQKNSTKNQ IENWGKELDR VFDFMKLLSS FPNHYKTGTK 121 RILVLQAIFE NPHNAISAKK SKQLVNFLKN KKVNISKDAF SLRSFELDFK VVVLIAEKFP 181 TKESILEKIA SLPKLKKEDL EIDEENKQNF NQNKELDLVE ELTKDKDTFV IGSLIKSLFA 241 GLNIPFHNTQ PSQQPLGGVS DLTNKGSYDR LLISEYANDD LIFLSRLANN EALFLNREVP 301 PHQNDSERIF LIDISLKNWG TPKILAFAVA IAISSHPKSD SICHFYLIDE YRYRKIELDT 361 VHNVIESLLF FGTGLTARKG LELFFEENTK KLDLSNKEIF YLSSTEAIQE KLIQSTLEDY 421 KKYISYWIHT DLESENQKNT GKITVYKKKQ NSKSYIQTLN LNLDKLWTNP PKKNKKSKDK 481 NQKELYSLLL KDAGTRKLEV LKLLKDETQT SLKEAKDKID NLPQTIKENL SLEDGKKLKA 541 KFEELGATVQ LVLQEEKNEE FDCPILFPEA TNPKVKKYFS DTEFYLITAQ KSLMRLTLKE 601 KHQGYSVKKG WQRLYQNLDY RDGLTSITTN TEYEKMLFWL NIDKREVNIM NLKTKVKKQS 661 VFVDWKWSNR RNILPYMHNF VYFLDDKNSY IFDWTGKEED EVKIFNRKTH LEKPLKFYDD 721 YVKNLAKIPK SSHRNVVLKN VKRVFINSEN ELVISKHKLI LNSGQILKLE IADKKLEKKL 781 IAEAESKNEF IFEDGSSIFI DRDGMIILKS SNTEIPTIYV PACLDCVLGV GTDEYFAGVD 841 YFLPLDTNLE KIENQLFYVK FIQKFIQTII EKS //