LOCUS AFM05418.1 1155 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 PAS domain S-box protein. ACCESSION CP003345-2906 PROTEIN_ID AFM05418.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_3078" /note="PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE); PAS fold; TIGRFAM: PAS domain S-box" /transl_table=11 /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR010822" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" BEGIN 1 MLNRFSIRTK ITIRLLIVVL IAAFVLSGVS YNRGKEAIEQ RYWQNLKVIN TLKSKEIQGV 61 FSQINSHVSL LQGYSSVLQS LRKVNTIAEN KYTDTLKNQL NNKLNKSLLP FQKTYNYPNL 121 VLVNKDGRII YKTNPKADYL IFGRIYDRYQ EILTYAQDGI YFNEPRVAKE LSGNLSRMEA 181 IAPVYDPEQN GLKIGYIIVE LDMQVVYDVV SDTTGLGQTG EIVLGRQKSK TTLTFLNKLK 241 KQHHNTPKII GDGKAEGLER ALKEKTTGYG FSIDYKGSET LSAWNYIEPV GWGIVTQIDK 301 SAVDNDLNGL VMAFILTGGV IIIVAGGVVF GFSTVLTRPI ERLQVVLGIV AKGELPKEIK 361 KETNDEIGQM TEAVNNLVQA LKRTADFAYQ IGKGNYKASF KPMGDNDTFG NALITMRDSI 421 QDADSKDKQR NWIVSGVAEV GEILREYQTI EELSEKIIAF ITEKINAVQG SFYIVEEDEI 481 TQESSIVMRA TYAYHKRKYL KKSFRFAEGL VGQAAIEQDI ILRTEIPDNY MTISSGLLGE 541 QKPKALLIVP LITDEKVYGV LEFAGLSCFT DTEVNFVREI SIIIARTIFN IKINDRTISL 601 LQESQQMSEE LQLQQEVLRQ NAEEMESTQE ELRKSNARLE EQILEVNRTQ KRMQVLLENA 661 SEVITIYEKN GKVRYISPSI ESILGYEQSE LIGTNDVDNV QQGSKETFKQ LFENLLEHPD 721 ENITIQYEYR KKNGDPVWLE ATGTNRLSDP AIRGIVINSR DITERRRAEQ ESRMRGQMQA 781 LSENSPDLIM RINPEGKIFY VNPTIKNLTG LEPSLLTNKM MKGSELPIAI VNRIEEITDK 841 VNRTGNKVLR ELEIDSVAGE RVMQTTAIPE YNDQAYLESI LVVSHDITER KRNEFEVRET 901 NRKISESINY ARRIQSAILP ESRHLQSIFS DSFIFYKPRD IVSGDFPWYV QKGDDVYIAA 961 VDCTGHGVPG ALISLIGYFI LNEIISSSQT ILSPAQILDR LNKGVAQTLR QDTEGNTKDG 1021 MDIALCHINT KQNKVEFAGA HRPLYILPKE GDLIQIKGDR KPIGGGAIYN ASSDFSNHSQ 1081 TISEGDSIYI FSDGLPDQFG GEEDKKFSSK QIRELLIKNR TQNMEEMHTT FENRFEEWMG 1141 NNKQIDDILM IGIKF //