LOCUS AFM03933.1 1237 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 DNA/RNA helicase, superfamily II, SNF2 family protein. ACCESSION CP003345-1421 PROTEIN_ID AFM03933.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1511" /note="PFAM: SNF2 Helicase protein; Helicase conserved C-terminal domain; SNF2 family N-terminal domain; SWIM zinc finger" /transl_table=11 /db_xref="InterPro:IPR000330" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR007527" /db_xref="InterPro:IPR014021" /db_xref="InterPro:IPR022138" BEGIN 1 MAKAFGKTWW GQKWLEAFTD IDDTGRLSRG KTYARKGSVF QKQIRGTAIE AKIKGSKTSP 61 YSAYVEMKEF NETDKKIILE TLQKRPELWQ QLTQRQLPKD LFDILEQEDI NLFPKRWRDF 121 KAACSCPDFA MPCKHIAAVI YSFSEEIDAN PFLIFLLHDF DLLSYIEKNA QKQKMASMPK 181 WEEKWHLLDE IEELPEPKEI ENIDISFAQI PNLEQTLLQL LSPNPPFFEK EDFKSILQTT 241 YQKLPKTIDE YWKDYETEEE REEDRKYNEE FYAKNGTKNK KEDKNYYEIE RFEFTFDASY 301 KLRNTFKITT EKRKLKKIKI DNGLGFLLDL FYTLPTTEIK RLSEQLQVLF KIHQFALSLL 361 ERGAIVPTIF SNQKKEVFIR WQPAVLNENV KEILTQISET LDIRTVNIGL KSQNKEVTKT 421 KIEPHYADQL ESTLTILGII LHFYIEETWI KTRYKKRLSS LNMKIESIFF MNLAMNFTGY 481 QEKDMPHLVR AWLGKFLLSE RKYVPILSIQ ENFEEEETDY ESINNYEEAD ETFSLEILIE 541 DKEHQHKHDE NKTPHIPLAV IFEDDSFEEV RLPIVQDLQI LSDFLVEIRD IIKSQGQVSK 601 EIEATRLSKI LSDIFPVLQI LGIKILLPKR LEKIVRPRLK ASLNSKNKKE ESFLKLGNVW 661 DFDWEIAMGE DKISAADFEK MIAQKIGLWR FRDQYVLLDE KEIALIVEQL KKKKKKLSNA 721 ELLQTALTEE YQGTKVELSE KVKALLQGLK EAPKIEIPQN LKATLRPYQQ VGYEWLYQNA 781 KLGLGSILAD DMGLGKTLQT ITFLLKLKEE NQLGGNNQPA LIVLPTTLLS NWQREIEKFA 841 PSLSFYIYHG AKRKWLESEK DNFKPDIWLT TYGTVRSEDK RFAEREWSCV VIDEAQAIKN 901 PAAGQTEAIK MLQSPRKIAL SGTPVENRLS EYWSIFDFVN ENYLDVLSVF RTNFSIPIER 961 DRDEHKSDIF KKMTAPFIMR RLKTDKSIID DLPEKIEKDQ ICNLTKEQTL LYETTLREGM 1021 KVVEEHQGIK RRGVILKLMM QLKQICNHPA QFLKESTMKI SNSGKTKLLL EIVKQIYEAD 1081 EKVLIFTQYT KMGELLKDFL QSTFHTEVPF LHGGLTRKGR DKAVETFQNE EHCPFMVLSL 1141 KAGGTGLNLT SASHVIHFDL WWNPAVEAQA TDRAYRIGQK NNVLVHRMIT KGTLEEKINE 1201 LLQSKKEIAD LAITTNNAWI TEMNTGELHE LFALKDL //