LOCUS AFM02712.1 1166 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 choline dehydrogenase-like flavoprotein protein. ACCESSION CP003345-200 PROTEIN_ID AFM02712.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_0217" /note="PFAM: GMC oxidoreductase" /transl_table=11 /db_xref="InterPro:IPR000172" /db_xref="InterPro:IPR007867" /db_xref="InterPro:IPR013027" BEGIN 1 MKNRRLSKPI EKMLPHYDVV VIGSGYGGSI SASRLSRAGK KVALLERGKE YLTGEFPDTQ 61 IEAAANMQLN LNNKRIGSES ALYDFWVDED INVFKGCGLG GTSLVNANVA IRPEKWVLKD 121 NSFPKIQKDN AFPQVLQEES ENSHSDLEEG YRLAYQMLKP NPYPESFPIL KKMEAHKKSA 181 QAMNQPFSKT DINVNFNIDG KNHVGVEQKP CNLCGDCVSG CNVGAKNTTM MNYLPDAQNF 241 GADIFVECSV SYLEKNNDKW IIHFEILGAQ RHKFDAPEMY VTADTVVLSA GTLGSTEIML 301 RSRDKGLEVS DKLGFHFSGN GDVLGFGYNT EEKINGIGRG QHLDRENPVG PCITSVIDMR 361 KAKNQEEGMI LQEGVVPSAM AKIFPEFMAT MANLAGKDES KDGFVSEIIE KKRELESIVR 421 GAYKGATQNT QTYLIMTHDK SAGVLTLKDN HLQISWADVG HEEIFKKASN RIGEATKALK 481 GTSVPNPTWT KLFNKDLITV HPLGGCIMGE DSNKGVVNHK GQVFCAKNGS EQVYENLYIA 541 DGSIIPCSLG ANPLLTISAL SERICKIMAR EKNWKIDYSL PSKPTISPED TNEKIPLGIQ 601 FTETMKGFIN PKIDEKSKCE TPEQFEEEQK LGKSKNQEFK ITLTVICEDL ETMLKENQHL 661 SKMIGTVEAS LLSAEPLLIT EGNFQLFVEN EGEMETKKMV YTAKLFNPKG ESYYFEGYKM 721 IRDDKGFDLW NDTTTLYTTI FKDKENKKGQ ITAQGIINVH LTDFIKQMTT MQALHADTST 781 EKLKALYSFG KYFAGNLYDT YGGVFAKDSE FNPSATPRKK RPLRAPEPEI YPVTTSDNVK 841 LRLTRYDARK KGENKGSVML AHGFSVSGLI FEIDTPDTNL VEYLCAHGYD VWVMEYRTSI 901 ALPCSKDQST ADDIAMKDFP ACVNKVLEVT GQKDIQLFTH CVGAITGVMA MLGGLKGVRS 961 MVCFQVAADI IGGEQIKLKA AAHIPSLLKK FGIDTMTAYT DTNASWLDKA LNTAVKVYSS 1021 VLGSETNDPI ANRVTFMFST LYEKENIDKK TFDSFHEMFG VTNLTTYEQL TLMTREKELR 1081 DFDGNNIYLP HAKDRLNIPM CFVHGEKNEV FVPEATERTY KRLKKLNPKQ HYERHVIEGY 1141 GHQDCVIGKN ADRDVWHFVV DFLDKN //