LOCUS AFI87032.1 988 aa PRT BCT 27-JUN-2016 DEFINITION Aggregatibacter actinomycetemcomitans D7S-1 hypothetical protein protein. ACCESSION CP003496-1038 PROTEIN_ID AFI87032.1 SOURCE Aggregatibacter actinomycetemcomitans D7S-1 ORGANISM Aggregatibacter actinomycetemcomitans D7S-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter. REFERENCE 1 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J.S., Si,Y. and Bumgarner,R. TITLE Genome sequence of naturally competent Aggregatibacter actinomycetemcomitans serotype a strain D7S-1 JOURNAL J. Bacteriol. 192 (10), 2643-2644 (2010) PUBMED 20348265 REFERENCE 2 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R.E. and Chen,C. TITLE Evolutionary Divergence of Aggregatibacter actinomycetemcomitans JOURNAL J. Dent. Res. 95 (1), 94-101 (2016) PUBMED 26420795 REFERENCE 3 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J., Si,Y. and Baumgarner,R. TITLE Direct Submission JOURNAL Submitted (01-MAR-2010) Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 4 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (23-APR-2012) Department of Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 5 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (18-JUL-2014) Division of Periodontolology, Herman Ostrow School of Dentistry, University of Southern Californak, 925 W. 34th Street, Los Angeles, CA 90089, USA REMARK Sequence update by submitter COMMENT On Jun 27, 2016 this sequence version replaced CP003496.1. Source of DNA for this strain is available from: Casey Chen, Division of Primary Oral Health Care, USC School of Dentistry, 925 W 34th Street, Los Angeles, CA 90089-0641. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 24-MAY-2014 Assembly Method :: 454 Newbler assembler v. 2.0.00.22 Assembly Name :: AaD7S-1v2.0 Genome Coverage :: 17.58x Sequencing Technology :: 454 Illumina MiSeq ##Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/17/2014 13:42:00 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.6 (rev. 440435) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 2,197 CDS :: 2,041 Pseudo Genes :: 83 CRISPR Arrays :: 3 rRNAs :: 19 (5S, 16S, 23S) tRNAs :: 53 ncRNA :: 1 Frameshifted Genes :: 69 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Aggregatibacter actinomycetemcomitans D7S-1" /mol_type="genomic DNA" /strain="D7S-1" /db_xref="taxon:694569" protein /locus_tag="D7S_01259" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_014702319.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTANTQTKRK TKIKLDLDKI NQKAQELSDG HSKCELPVIP LYPVRYGLSL GYLADARDGT 61 VKNLPDRAPR TIGASPDYEL MQLRQGFVYI YAHTKHRLFS TDDKGKWLVF RYVTNNDDAN 121 SASDFEQLSH GKNAGLNACF LLCKWGEEGA NGNWTLGQID TKNYPCASHL KSFNTAFVDK 181 DVDIVDIAYS EYMWSSEIIH LLETKAALRQ AIMTTVRTDA PENHSAPLKS LGTHVLEYQS 241 GNQSDDFADK TQDWYTKLNS AAIPSPLTGL PDYEEKGLMV ALQDVVGEMH ELQKIIIDLT 301 EKQKAYYARY AYPIAIGNII DPKIGFDVRG KTYPFKEKER VIAQKGVQGA LISEFNSKMT 361 ALLNVPFERY EKPINALVKQ VTNLANQRAS FREFFKVSGD IGRYVPKEGC IDRGFYVFYR 421 LLADFTYGLE CSSDGIAVLE SLFSEHAAPA GKVPTTVGWL KEHSKKVTDA VYGVAMKIPA 481 RQRQNLLKGY FQAMEHVYLN SGRTMANLVA LRKTQFDKVM AIYGWDEARL VKNADYFFAE 541 VADKFLDRLM KQDSSRQYKK ERHETGRGKK AIRQELKQIK QTLKEQNRIT LDEIRDLEAR 601 IQLSERYYGF TGVLAIYAGM LSLNNDLTVP RKLVRTAAGR LALDPVMVKT ADTAYALGLM 661 GKPGAGIGAL RNLAGASARS VLVGVRALAY TGMVVDGGVL TAVIAFGGLQ EAIVNEDNVS 721 IVANGAIIAS SSVLVLSGIV AMVSKGTLAS TLGVANPYAL VIVLLGFAAI ALFGSTPLET 781 WVKKGFWGRK AYFYWNEKRD DVNNQIKRAE ILANENIAEI AKQYLARLEL VTTGQVDAVA 841 GAGLPMNEQV EDYILISQGF EKELYEYDIQ SGLKINKISR DYYRISCAEF RRTEPTTQNL 901 VINLYQWGLA QAQPIKRFYA AASGEVTFYL AENNIHIEDI RIVAEFTDKE GDTFTDVYLS 961 EEFNHRTREL EQRMQKAVED ARDEGYSE //