LOCUS AEE73616.1 399 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana polypyrimidine tract-binding protein 1 protein. ACCESSION CP002686-41 PROTEIN_ID AEE73616.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 23459830) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 23459830) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 23459830) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" protein /gene="PTB1" /locus_tag="AT3G01150" /gene_synonym="ATPTB1" /gene_synonym="POLYPYRIMIDINE TRACT-BINDING" /gene_synonym="polypyrimidine tract-binding protein 1" /gene_synonym="POLYPYRIMIDINE TRACT-BINDING PROTEIN 1" /gene_synonym="PTB" /gene_synonym="T4P13.16" /gene_synonym="T4P13_16" /inference="Similar to RNA sequence, EST:INSD:ES105956.1,INSD:EL124653.1,INSD:EG427811.1, INSD:T42135.1,INSD:DR299213.1,INSD:ES020955.1, INSD:CF774130.1,INSD:DR371069.1,INSD:EH897835.1, INSD:T04473.1,INSD:DR299207.1,INSD:EL265989.1, INSD:DR299212.1,INSD:EL191737.1,INSD:DR299216.1, INSD:DR299214.1,INSD:BE530321.1,INSD:DR299211.1, INSD:EL252275.1,INSD:ES016377.1,INSD:BP794786.1, INSD:DR299215.1,INSD:DR299219.1,INSD:DR299217.1, INSD:DR299208.1,INSD:ES168313.1,INSD:DR357367.1, INSD:DR299218.1,INSD:AV807552.1,INSD:AV809137.1, INSD:DR299210.1,INSD:EL028796.1,INSD:AV441089.1, INSD:AV552212.1,INSD:EL263814.1,INSD:AV829325.1, INSD:AV536210.1,INSD:DR299206.1" /inference="Similar to RNA sequence, mRNA:INSD:BX823271.1,INSD:AF076924.1,INSD:BX825797.1, INSD:BX822327.1" /note="polypyrimidine tract-binding protein 1 (PTB1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: pollen germination, regulation of RNA splicing, regulation of translation; LOCATED IN: nucleus, cytoplasmic mRNA processing body, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 2 (TAIR:AT5G53180.1); Has 1792 Blast hits to 964 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 1278; Fungi - 41; Plants - 303; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink)." /db_xref="TAIR:AT3G01150" /db_xref="Araport:AT3G01150" intron_pos 62:0 (1/8) intron_pos 132:0 (2/8) intron_pos 153:0 (3/8) intron_pos 209:2 (4/8) intron_pos 229:0 (5/8) intron_pos 264:0 (6/8) intron_pos 291:1 (7/8) intron_pos 329:0 (8/8) BEGIN 1 MSSSGQTQFR YTQTPSKVVH LRNLPWECVE EELIDLCKRF GKIVNTKSNV GANRNQAFVE 61 FADLNQAISM VSYYASSSEP AQIRGKTVYI QYSNRHEIVN NQSPGDVPGN VLLVTFEGVE 121 SHEVSIDVIH LVFSAFGFVH KIATFEKAAG FQALVQFTDV ETASAARSAL DGRSIPRYLL 181 SAHVGSCSLR MSYSAHTDLN IKFQSHRSRD YTNPYLPVNQ TAMDGSMQPA LGADGKKVES 241 QSNVLLGLIE NMQYAVTVDV LHTVFSAYGT VQKIAIFEKN GSTQALIQYS DIPTAAMAKE 301 ALEGHCIYDG GYCKLRLSYS RHTDLNVKAF SDKSRDYTLP DLSLLVAQKG PAVSGSAPPA 361 GWQNPQAQSQ YSGYGGSPYM YPSSDPNGAS PSGQPPYYG //