LOCUS ADU49328.1 844 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 RND superfamily drug exporter protein. ACCESSION CP002343-2766 PROTEIN_ID ADU49328.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_2827" /note="COGs: COG2409 drug exporter of the RND superfamily; InterPro IPR000731; KEGG: ske:Sked_37220 predicted RND superfamily drug exporter; SPTR: Predicted RND superfamily drug exporter; PFAM: MMPL family" /transl_table=11 BEGIN 1 MAEFLFRLGQ SAARRARLVI ALWFVLLLTA GLAFAVGAGT LTSTVSIPGT RTAQVTERLQ 61 AVLPQASGGN GTVVFATTDG SALTDAQRAA ISAEVRDARG LDAVRTVVDP FETERDRAGR 121 VDEIEQGRAQ IEDGRQQLAA GVAKLEDGQT QLDAAREQAD AAGTLDQIAE VLDGQQANLD 181 ASRKALQERA DQLDAGSRQI DEGARLLELS SGIGMVSTDR STALVTVLFD KPQVEVTQED 241 KDAVLAAFGS PLDGVKVSYS AELASGIPGI LGVGEVIGIV VAGLVLIVML GTLVGAGLPI 301 LTALIGVAIG ALATMSLSSA IEMTSVTPVL GLMLGLAVGI DYSLFIVNRH RRQLKQGYDV 361 EESIGLANGT SGNAVVFAGA TVLIALLALN VTGIPFLGLM GTVGALSITI AVLIAVTLTP 421 ALLGVLGERI LSRRERTRLA AAGARAEATA LGAPPVDSAP TTRGPGTRPM STLRAVGSIV 481 LGISALLAIA LPSLDLRLGL PDGSSEDTAS TQYQAFSTIS DQFGPGRNAP LLVVADIAGV 541 PGDTPDVSVQ AAVAEEIAAQ GDVVAIAPIG LSEGRTVAAF QVVPAGGPND PSTEQLVHTL 601 RGLEPMGGAV SLDVAGMASG NIDISGKLSD ALPAYLALVV GLSLVILVLV FRSLFVPAIA 661 TLGFVLSYFA AIGGVVAIYQ WGWLSDIFGV DNPSPILSFL PTMLAGILFG LAMDYMLFLG 721 SGMREAYVHG APARLAVVQG LHAGRSVVTA AAIIMMAVFG GFVFSHSAMI RPIGFGLAFG 781 VLVDAFVVRM LIVPSLMHLA GDRAWWLPGW LDRRLPNLDV EGAALERRHP HLEHHEEAVA 841 PGRR //