LOCUS ADU49267.1 1150 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 DNA-directed RNA polymerase subunit beta protein. ACCESSION CP002343-2705 PROTEIN_ID ADU49267.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_2766" /EC_number="2.7.7.6" /note="COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR010243: IPR007644: IPR007642: IPR007645: IPR 019462: IPR007120: IPR007641: IPR007121; KEGG: kra:Krad_0680 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit" /transl_table=11 BEGIN 1 MSTAQTPSGR LSFAKIREPL EVPDLLALQT ESFDWLLGNE RWQARVAAAK AEGRTDVPDR 61 SGLEEIFEEI SPIEDFSGSM SLSFRDHRFE ETRKTIEACK ERDQTYDAPL FVTAEFMNAQ 121 TGEIKSQTVF MGDFPLMTER GTFIINGTER VVVSQLVRSP GVYFERTPDK TSDKDIYTTK 181 IIPSRGAWLE FEIDKRDMVG VRVDRKRKQS VTVLLKALGW TEAQILEEFG DFESMRLTLE 241 KDHTQGQDDA LLDIYRKLRP GEPPTKEAAQ TLLDNLYFNP KRYDLAKVGR YKINKKLGLD 301 GSINDSTLAI DDIVATIKFL VTLHDGRDSM QGVKNGEPID VRVEVDDIDH FGNRRLRSVG 361 ELIQNQVRTG LSRMERVVRE RMTTQDVEAI TPQTLINIRP VVASIKEFFG TSQLSQFMDQ 421 NNPLAGLTHK RRLSALGPGG ISRDRAQMEV RDVHHSHYGR MCPIETPEGP NIGLIGSLAS 481 YGRINAFGFI ETPYRKVNEG VVSDEVHYLS ADEEDKYVVA QANARVDEDG RFAEDRVLVR 541 RKGEVELIPG EDVDYMDVSP RQMVSAATAM IPFLEHDDAN RALMGANMQR QAVPLVKSEA 601 PLVGTGMEFR AALDSGDVVR AEKAGVVQEV SADLVTVAND DGTYQTYRIA KFARSNQGTS 661 YNQVVVVNEG DRVETGGVIA DGPATDGGEM ALGRNLLVAF MSWEGHNYED AIILSQRLVQ 721 DDVLSSIHIE EHEVDARDTK LGPEEITRDI PNVSEDVLAD LDERGIIRVG AEVRDGDLLV 781 GKVTPKGETE LTPEERLLRA IFGEKAREVR DTSLKVPHGE TGTVIGVKEF RADLGDDLPP 841 GVNQLVRVYV ANKRKITDGD KLAGRHGNKG VISKILPVED MPFLEDGTPV DVILNPHGVP 901 RRMNLGQILE LHLGWAANRG WKIEGNPEWA KQIPADAHEA PPGSRVATPV FDGASEDVVT 961 GLLDSTLKTR DGVRLIDGTG KTRLFDGRSG EPFPEPVAVG YMYILKLHHL VDDKIHARST 1021 GPYSMITQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAYTLQ ELLTIKSDDV PGRVKVYEAI 1081 VKGENIPDSG IPESFKVLLK EMQSLCLNVE VLNSEGTTIE MKESDEEVFR AAEELGIDLS 1141 RREPSSVEEV //