LOCUS ADU47108.1 1136 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 peptidase M28 protein. ACCESSION CP002343-546 PROTEIN_ID ADU47108.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_0563" /note="COGs: COG3227 Zinc metalloprotease (elastase); InterPro IPR011096: IPR013856: IPR001570: IPR007484; KEGG: sro:Sros_3786 zinc metalloprotease (elastase)-like protein; PFAM: peptidase M28; peptidase M4 thermolysin; Propeptide peptidase M4 and M36; Peptidase M4 thermolysin; SPTR: Zinc metalloprotease (Elastase)-like protein; manually curated; PFAM: Fungalysin/Thermolysin Propeptide Motif; Thermolysin metallopeptidase, alpha-helical domain; Peptidase family M28; Peptidase propeptide and YPEB domain; Thermolysin metallopeptidase, catalytic domain" /transl_table=11 BEGIN 1 MTRPLPRRLG RLVALGSLAG LATPLALQAP LAAAVPPPLA GNAPPATVGS ALAGQPSKDK 61 ALAAADAAIQ RSLGAVAASG GEAFIRQTAN PGPGGRYYVL YQRSWKGLPV IGADAIVTAD 121 ETGAVRDITH ATDRVPSVAS TRPSVSAGSA AAAATALVAT VDHVEGPDLV IFMGDGKAPR 181 LAWHVRVEGE RASGRPAVLE AYVDARSGKV ISAEDLVREA TGYGHHNGTV SITTTGSGSS 241 YSMASTSAPG LKCQNQSGTT YTDSDNVWGN GSGTDLPTAC VDAVYGGEQE ELMLAAWAGR 301 NGINGSGSNY PARVGLADVN AYWNGSYANF GHNQAGTKQA TPMDVVAHEF GHGVFQFSGG 361 SGGSGNEAGG LNESTGDILG AATEFYAGNA SDPGDYLVGE EVDLVGQGPI RNMYDPAALG 421 DPSCYSADIV NTEVHAAAGP QNHWFYLLAE GNNPGGGKPS SPICTGGPSS VTGIGVQKAT 481 NIFVNAIQRK TSPWTHAKAR VATLQATKDL YPGSCTEFNT VKAAWLAVAV GPQSTEPTCT 541 ASSQDFAMTL SPTSGSIDAG ASATATVATT TTSGSAQSVT FSATGLPSGA TVAFSPQTIT 601 SGASSTMTIA TSTSTPAGTY TVTVLGDGAA IDRTATFTLA VGGGTPGPTA PDIDVEKVKA 661 HLSALQTIAT SNSGNRRAGS PGYTASVAYV KDKLTAAGFT VTLQRCTSCT YPSDNIIADW 721 PGGDPNRTYV FGAHLDSVSS GAGLNDNGSG SAAILETALA LARQNPTMAG HLRFAWWTDE 781 EQGLNGSDFY VRSLTSTQRS QIKAYYNFDM VASTNGGYFV NHVTSAAAAP MKAYWDGLGL 841 APEENTEGAG RSDDYSFEAY GIPTSGYAMG ASARKTSAQA QKWGGTAGAS YDPCYHSSCD 901 TYPSNVNATG LNRAADGIAH TAWAQAVGTD TQPGDDFSVS VSPTAGSVEA GSSTTATVRT 961 AVTSGSAVTV TLSVSGLPAG TTATFSPATV TAGGSSTLTI SSSSSTPAGT SNVTVTAVGG 1021 GKSHTAGYAL TVTSTASGCG GYDVVQSGTV TSGGTTYLPY VYDSTAGVMT ACLDGPNGVD 1081 FDLYLQKWNG SSWSTVASST TSAPDETLTY SNTAGYYRLA VKAYSGSGSF TTGISG //